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List of works by Tomi Suomi

A Data Analysis Protocol for Quantitative Data-Independent Acquisition Proteomics

scientific article published on 01 January 2019

A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation

scientific article published on 31 May 2017

A systematic evaluation of normalization methods in quantitative label-free proteomics

scientific article published in January 2018

Accurate Detection of Differential Expression and Splicing Using Low-Level Features

scientific article published on 01 January 2017

Brief Isoflurane Anesthesia Produces Prominent Phosphoproteomic Changes in the Adult Mouse Hippocampus

scientific article

Compressive stress-mediated p38 activation required for ERα + phenotype in breast cancer

scientific article published on 29 November 2021

Computational solutions for spatial transcriptomics

publication published in 2022

Cross-correlation of spectral count ranking to validate quantitative proteome measurements.

scientific article published on 26 March 2014

Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota-Implementation and Computational Analysis

scientific article published on 04 December 2019

Enhanced differential expression statistics for data-independent acquisition proteomics

scientific article

HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma

scientific article published on 04 July 2017

Optimization of Statistical Methods Impact on Quantitative Proteomics Data

scientific article

PhosPiR: an automated phosphoproteomic pipeline in R

scientific article published on 01 January 2022

Phosphonormalizer: an R package for normalization of MS-based label-free phosphoproteomics

scientific article published on 15 September 2017

ROTS: An R package for reproducibility-optimized statistical testing

scientific article

SimPhospho: a software tool enabling confident phosphosite assignment.

scientific article

Statistical and machine learning methods to study human CD4+ T cell proteome profiles

scientific article published in 2022

Using Peptide-Level Proteomics Data for Detecting Differentially Expressed Proteins

scientific article

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