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List of works by Joao Paulo

A Triple Knockout Isobaric-Labeling Quality Control Platform with an Integrated Online Database Search

scientific article published on 27 March 2020

An Internal Standard for Assessing Phosphopeptide Recovery from Metal Ion/Oxide Enrichment Strategies

scientific article published on 18 April 2018

Author Correction: Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis

scientific article published on 15 May 2020

Blocking an N-terminal acetylation-dependent protein interaction inhibits an E3 ligase.

scientific article

Brain Region-Specific nAChR and Associated Protein Abundance Alterations Following Chronic Nicotine and/or Menthol Exposure

scientific article published on 28 October 2019

Chromatin accessibility promotes hematopoietic and leukemia stem cell activity

scientific article published on 16 March 2020

Co-option of Plasmodium falciparum PP1 for egress from host erythrocytes

scientific article published on 15 July 2020

Compensatory metabolic networks in pancreatic cancers upon perturbation of glutamine metabolism

scientific article

Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation

scientific article published on 10 February 2017

DPP9 sequesters the C terminus of NLRP1 to repress inflammasome activation

scientific article published on 17 March 2021

Dual DNA and protein tagging of open chromatin unveils dynamics of epigenomic landscapes in leukemia

scientific article published on 01 March 2021

Filamin C Cardiomyopathy Variants Cause Protein and Lysosome Accumulation

scientific article published on 18 August 2021

Filter-based Protein Digestion (FPD): A Detergent-free and Scaffold-based Strategy for TMT workflows.

scientific article

Global proteomics of Ubqln2-based murine models of ALS

scientific article published on 04 December 2020

HYpro16: A Two-Proteome Mixture to Assess Interference in Isobaric Tag-Based Sample Multiplexing Experiments

scientific article published on 11 November 2020

Identification of Endogenous Adenomatous Polyposis Coli Interaction Partners and β-Catenin-Independent Targets by Proteomics

scientific article published on 03 June 2019

Improved Method for Determining Absolute Phosphorylation Stoichiometry Using Bayesian Statistics and Isobaric Labeling.

scientific article

Integrated proteogenetic analysis reveals the landscape of a mitochondrial-autophagosome synapse during PARK2-dependent mitophagy

scientific article published on 06 November 2019

Loss of tumor suppressor inositol polyphosphate 4-phosphatase type B impairs DNA double-strand break repair by destabilization of DNA tethering protein Rad50

scientific article published on 27 April 2020

MS3-IDQ: Utilizing MS3 Spectra beyond Quantification Yields Increased Coverage of the Phosphoproteome in Isobaric Tag Experiments.

scientific article published on 20 February 2018

Mammalian cell proliferation requires noncatalytic functions of O-GlcNAc transferase

scientific article published on 01 January 2021

Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis

scientific article published on 13 April 2020

Mutations in RABL3 alter KRAS prenylation and are associated with hereditary pancreatic cancer

scientific article published on 12 August 2019

Optimized Workflow for Multiplexed Phosphorylation Analysis of TMT-Labeled Peptides Using High-Field Asymmetric Waveform Ion Mobility Spectrometry

scientific article published on 18 December 2019

Probing the missing mature β-cell proteomic landscape in differentiating patient iPSC-derived cells.

scientific article

RAB7A phosphorylation by TBK1 promotes mitophagy via the PINK-PARKIN pathway

scientific article published on 21 November 2018

RNAmetasome network for macromolecule biogenesis in human cells

scientific article published on 15 December 2021

Regulation of protein abundance in genetically diverse mouse populations

scientific article published in 2021

Rixosomal RNA degradation contributes to silencing of Polycomb target genes

scientific article published on 30 March 2022

Selective alanine transporter utilization creates a targetable metabolic niche in pancreatic cancer

scientific article published on 27 April 2020

Strain-Specific Peptide (SSP) Interference Reference Sample: A Genetically Encoded Quality Control for Isobaric Tagging Strategies

scientific article published on 18 March 2021

Streamlined Tandem Mass Tag (SL-TMT) Protocol: An Efficient Strategy for Quantitative (Phospho)proteome Profiling Using Tandem Mass Tag-Synchronous Precursor Selection-MS3.

scientific article

Super Heavy TMTpro Labeling Reagent: An Alternative and Higher-Charge-State-Amenable Stable-Isotope-Labeled TMTpro Variant

scientific article published in 2021

Systematic quantitative analysis of ribosome inventory during nutrient stress

scientific article published on 01 July 2020

TKO6: A Peptide Standard To Assess Interference for Unit-Resolved Isobaric Labeling Platforms

scientific article published on 06 December 2018

TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples

scientific article published on 16 March 2020

Temporal Proteomic Profiling of SH-SY5Y Differentiation with Retinoic Acid Using FAIMS and Real-Time Searching

scientific article published on 15 October 2020

Thiol-based direct threat sensing by the stress-activated protein kinase Hog1

scientific article published on 26 November 2019

Tissue-Specific Oncogenic Activity of KRASA146T

scientific article published on 05 April 2019

UBE2O remodels the proteome during terminal erythroid differentiation.

scientific article

Web-Based Search Tool for Visualizing Instrument Performance Using the Triple Knockout (TKO) Proteome Standard

scientific article published on 27 November 2018

mTMT: An Alternative, Nonisobaric, Tandem Mass Tag Allowing for Precursor-Based Quantification

scientific article published on 20 September 2019

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