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List of works by Vincenzo Belcastro

A crowd-sourcing approach for the construction of species-specific cell signaling networks

scientific article

A parallel implementation of the network identification by multiple regression (NIR) algorithm to reverse-engineer regulatory gene networks

scientific article

A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches

scientific article

Colocalization of coregulated genes: a steered molecular dynamics study of human chromosome 19.

scientific article

Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data

scientific article

Crowd-Sourced Verification of Computational Methods and Data in Systems Toxicology: A Case Study with a Heat-Not-Burn Candidate Modified Risk Tobacco Product

scientific article

Effects of cigarette smoke, cessation and switching to a candidate modified risk tobacco product on the liver in Apoe -/- mice--a systems toxicology analysis

scientific article

How to infer gene networks from expression profiles

scientific article published on 13 February 2007

Human bronchial epithelial cells exposed in vitro to cigarette smoke at the air-liquid interface resemble bronchial epithelium from human smokers

scientific article published on 25 January 2013

Identification of microRNA-regulated gene networks by expression analysis of target genes

scientific article

Interrogating the microbiome: experimental and computational considerations in support of study reproducibility

scientific article published on 08 June 2018

PML-RARA-associated cooperating mutations belong to a transcriptional network that is deregulated in myeloid leukemias.

scientific article published on 27 December 2016

Parallel Computing Algorithms for Reverse-Engineering and Analysis of Genome-Wide Gene Regulatory Networks from Gene Expression Profiles

article

Quantitative assessment of biological impact using transcriptomic data and mechanistic network models

scientific article

Reverse engineering and analysis of genome-wide gene regulatory networks from gene expression profiles using high-performance computing

scientific article published in May 2012

Reverse engineering gene network identifies new dysferlin-interacting proteins

scientific article published on 30 November 2010

Reverse engineering transcriptional gene networks

scientific article published on January 2014

Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure.

scientific article published on 5 January 2017

Systematic verification of upstream regulators of a computable cellular proliferation network model on non-diseased lung cells using a dedicated dataset

scientific article published on 23 July 2013

The centrosomal OFD1 protein interacts with the translation machinery and regulates the synthesis of specific targets

scientific article

The sbv IMPROVER Systems Toxicology Computational Challenge: Identification of Human and Species-Independent Blood Response Markers as Predictors of Smoking Exposure and Cessation Status

scientific article published on 14 July 2017

The species translation challenge-a systems biology perspective on human and rat bronchial epithelial cells

scientific article

Toxicological Assessment Via Gene Network Analysis

article

Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function.

scientific article published on 23 July 2011

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge

scientific article

Unravelling druggable signalling networks that control F508del-CFTR proteostasis

scientific article published on 23 December 2015

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