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List of works by Aaron R Jex

A first insight into the genotypes of Echinococcus granulosus from humans in Mongolia

scientific article published on 12 November 2010

A molecular diagnostic tool to replace larval culture in conventional faecal egg count reduction testing in sheep

scientific article

A perspective on Cryptosporidium and Giardia, with an emphasis on bovines and recent epidemiological findings

scientific article published on 23 March 2015

A portrait of the transcriptome of the neglected trematode, Fasciola gigantica--biological and biotechnological implications

scientific article published in 2011

A practical and cost-effective mutation scanning-based approach for investigating genetic variation in Cryptosporidium

scientific article published in November 2007

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

scientific article

A real-time PCR assay for the diagnosis of gastrointestinal nematode infections of small ruminants

scientific article published on January 2015

A self-sufficient pressure pump using latex balloons for microfluidic applications

scientific article published on 01 September 2018

A theoretical study to establish the relationship between the three-dimensional structure of triose-phosphate isomerase of Giardia duodenalis and point mutations in the respective gene

article

Advances in the diagnosis of key gastrointestinal nematode infections of livestock, with an emphasis on small ruminants

scientific article published on 30 January 2013

An improved method for PCR-based detection and routine monitoring of geosmin-producing cyanobacterial blooms.

scientific article published on 19 February 2018

An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes

scientific article published on 5 November 2009

Analyses of mitochondrial amino acid sequence datasets support the proposal that specimens of Hypodontus macropi from three species of macropodid hosts represent distinct species

scientific article published on 21 November 2013

Analysis of genetic variation in Globocephaloides populations from macropodid marsupials using a mutation scanning-based approach

scientific article published in August 2009

Analysis of nucleotide variation within the triose-phosphate isomerase gene of Giardia duodenalis from sheep and its zoonotic implications

scientific article published in January 2010

Analysis of the genetic diversity withinCryptosporidium hominisandCryptosporidium parvumfrom imported and autochtonous cases of human cryptosporidiosis by mutation scanning

article

Analysis of the transcriptome of adult Dictyocaulus filaria and comparison with Dictyocaulus viviparus, with a focus on molecules involved in host-parasite interactions

scientific article published on 31 January 2014

Annotation of the Giardia proteome through structure-based homology and machine learning

scientific article published on 01 January 2019

Ascaris suum draft genome

scientific article

Assessing calves as carriers of Cryptosporidium and Giardia with zoonotic potential on dairy and beef farms within a water catchment area by mutation scanning

scientific article published on August 2013

Assessment of the genetic relationship between Dictyocaulus species from Bos taurus and Cervus elaphus using complete mitochondrial genomic datasets

scientific article published on 30 October 2012

Barcoding of Giardia duodenalis isolates and derived lines from an established cryobank by a mutation scanning-based approach

scientific article published on August 2011

Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform.

scientific article

Bioinformatic exploration of RIO protein kinases of parasitic and free-living nematodes

scientific article published on 17 July 2014

Bioinformatics meets parasitology.

scientific article published on May 2012

Characterization of the Ca2+-gated and voltage-dependent K+-channel Slo-1 of nematodes and its interaction with emodepside

scientific article (publication date: December 2014)

Classification of Cryptosporidium species from patients with sporadic cryptosporidiosis by use of sequence-based multilocus analysis following mutation scanning

scientific article published on 30 April 2008

Comparative evaluation of two DNA isolation techniques for PCR-based diagnosis of gastrointestinal nematode infections in sheep.

scientific article published on 21 March 2013

Comparative genomics of Cylindrospermopsis raciborskii strains with differential toxicities

scientific article published on 29 January 2014

Corrigendum to "Profiling circulating miRNAs in serum from pigs infected with the porcine whipworm, Trichuris suis" [Vet. Parasitol. 223 (2016) 30-33].

scientific article published on 8 November 2017

Corrigendum: Responses of the Differentiated Intestinal Epithelial Cell Line Caco-2 to Infection With the GS Isolate

article

Cryptic parasite revealed improved prospects for treatment and control of human cryptosporidiosis through advanced technologies

scientific article published on January 2011

Cryptosporidium and Giardia taxa in faecal samples from animals in catchments supplying the city of Melbourne with drinking water (2011 to 2015)

scientific article published on June 2016

Cryptosporidium--biotechnological advances in the detection, diagnosis and analysis of genetic variation.

scientific article published on 04 March 2008

Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention

scientific article published on 22 December 2010

Deep sequencing approach for investigating infectious agents causing fever.

scientific article published on 14 May 2016

Defining the Schistosoma haematobium kinome enables the prediction of essential kinases as anti-schistosome drug targets

scientific article published on 4 December 2015

Detection of diarrhoeal pathogens in human faeces using an automated, robotic platform

scientific article published on 28 October 2011

Diagnostic and analytical mutation scanning of Cryptosporidium: utility and advantages

scientific article published on March 2009

Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus

scientific article

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis.

scientific article published in April 2018

Divergent Transcriptional Responses to Physiological and Xenobiotic Stress in Giardia duodenalis

scientific article published on 25 July 2016

Drug resistance in Giardia duodenalis.

scientific article published on 25 April 2015

Elucidating the transcriptome of Fasciola hepatica - a key to fundamental and biotechnological discoveries for a neglected parasite

scientific article published on 16 December 2009

Establishment of a robotic, high-throughput platform for the specific diagnosis of gastrointestinal nematode infections in sheep.

scientific article published on 3 November 2012

Evaluation and application of a molecular method to assess the composition of strongylid nematode populations in sheep with naturally acquired infections

scientific article published on 21 January 2011

Exploring molecular variation in Schistosoma japonicum in China

scientific article published in December 2015

Extracellular vesicles from early-stage P. falciparum-infected red blood cells contain PfEMP1 and induce transcriptional changes in human monocytes.

scientific article published on 18 January 2018

First genetic analysis of Cryptosporidium from humans from Tasmania, and identification of a new genotype from a traveller to Bali

scientific article published on 28 July 2014

First genetic classification of Cryptosporidium and Giardia from HIV/AIDS patients in Malaysia.

scientific article published on 23 March 2011

First molecular characterisation of Cryptosporidium and Giardia from Bubalus bubalis (water buffalo) in Victoria, Australia

scientific article published on 23 July 2013

First molecular characterization of Cryptosporidium and Giardia from bovines (Bos taurus and Bubalus bubalis) in Sri Lanka: unexpected absence of C. parvum from pre-weaned calves

scientific article published on 21 February 2014

First molecular characterization of Giardia duodenalis from goats in Malaysia

scientific article published on 27 August 2012

First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach

scientific article published on 6 August 2010

Flatworms have lost the right open reading frame kinase 3 gene during evolution

scientific article published on 15 May 2015

Genetic analysis of Giardia and Cryptosporidium from people in Northern Australia using PCR-based tools

scientific article

Genetic blueprint of the zoonotic pathogen Toxocara canis

scientific article published on 4 February 2015

Genetic categorization of Echinococcus granulosus from humans and herbivorous hosts in Iran using an integrated mutation scanning-phylogenetic approach

scientific article published in August 2009

Genetic characterisation of Cryptosporidium and Giardia from dairy calves: Discovery of species/genotypes consistent with those found in humans

article

Genetic characterization of Cryptosporidium parvum from calves by mutation scanning and targeted sequencing--zoonotic implications

scientific article published in August 2009

Genetic characterization of selected parasites from people with histories of gastrointestinal disorders using a mutation scanning-coupled approach

scientific article

Genetic classification of Echinococcus granulosus cysts from humans, cattle and camels in Libya using mutation scanning-based analysis of mitochondrial loci

scientific article published on 24 July 2010

Genetic richness and diversity in Cryptosporidium hominis and C. parvum reveals major knowledge gaps and a need for the application of "next generation" technologies--research review

scientific article published on January 2010

Genetic variation within theHypodontus macropi(Nematoda: Strongyloidea) complex from macropodid marsupial hosts in Australia

scientific article published in December 2012

Genome and transcriptome of the porcine whipworm Trichuris suis

scientific article published in July 2014

Genome variation in nine co-occurring toxic Cylindrospermopsis raciborskii strains.

scientific article published on 21 March 2018

Getting the most out of parasitic helminth transcriptomes using HelmDB: implications for biology and biotechnology

scientific article published on 21 December 2012

Getting to the guts of the matter: the status and potential of 'omics' research of parasitic protists of the human gastrointestinal system

scientific article published on 18 July 2013

Giardia/giardiasis - a perspective on diagnostic and analytical tools

scientific article published in November 2013

Harnessing Genomic Technologies to Explore the Molecular Biology of Liver Flukes-Major Implications for Fundamental and Applied Research

scholarly article by Neil D. Young published in August 2012

High resolution melting-curve (HRM) analysis for the diagnosis of cryptosporidiosis in humans.

scientific article

Highly sensitive non-isotopic restriction endonuclease fingerprinting of nucleotide variability in the gp60 gene within Cryptosporidium species, genotypes and subgenotypes infective to humans, and its implications

scientific article published in May 2010

Impact of gastrointestinal parasitic nematodes of sheep, and the role of advanced molecular tools for exploring epidemiology and drug resistance - an Australian perspective

scientific article published on 27 May 2013

Insights into the immuno-molecular biology of Angiostrongylus vasorum through transcriptomics--prospects for new interventions

scientific article published on 27 July 2013

Is Cryptosporidium from the common wombat (Vombatus ursinus) a new species and distinct from Cryptosporidium ubiquitum?

scientific article published on 14 June 2016

Local climate aridity influences the distribution of thelastomatoid nematodes of the Australian giant burrowing cockroach

scientific article

Long PCR amplification of the entire mitochondrial genome from individual helminths for direct sequencing

scientific article published in October 2007

Low cost whole-organism screening of compounds for anthelmintic activity.

scientific article published on 5 March 2015

Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions.

scientific article published on 25 June 2015

Massively parallel sequencing and analysis of the Necator americanus transcriptome

scientific article published on 11 May 2010

Mitochondrial genome of Angiostrongylus vasorum: comparison with congeners and implications for studying the population genetics and epidemiology of this parasite

scientific article published on 16 August 2012

Mitochondrial genomes of Anisakis simplex and Contracaecum osculatum (sensu stricto)--comparisons with selected nematodes

scientific article published on 5 November 2013

Mitochondrial genomes of Trichinella species and genotypes – a basis for diagnosis, and systematic and epidemiological explorations

scientific article published on December 2014

Molecular changes in Opisthorchis viverrini (Southeast Asian liver fluke) during the transition from the juvenile to the adult stage

scientific article published in 2012

Molecular characterization of Thelastomatoidea (Nematoda: Oxyurida) from cockroaches in Australia.

scientific article published on 27 March 2006

Molecular detection of Cryptosporidium cuniculus in rabbits in Australia

scientific article published on 5 August 2010

Molecular-based investigation of Cryptosporidium and Giardia from animals in water catchments in southeastern Australia

scientific article published on 27 December 2012

Monoaminergic signaling as a target for anthelmintic drug discovery: receptor conservation among the free-living and parasitic nematodes

scientific article published on 11 February 2012

Mutation scanning-based analysis of anisakid larvae from Sillago flindersi from Bass Strait, Australia

scientific article published in February 2012

Mutation scanning-coupled tools for the analysis of genetic variation in Taenia and diagnosis - status and prospects

scientific article published on 18 May 2009

New species of Cloacina von Linstow, 1898 (Nematoda: Strongyloidea) parasitic in the stomachs of wallaroos, Osphranter spp. (Marsupialia: Macropodidae) from northern Australia

scientific article published on 28 May 2018

Next-generation molecular-diagnostic tools for gastrointestinal nematodes of livestock, with an emphasis on small ruminants: a turning point?

scientific article published on January 2013

Phylogenomic and biogeographic reconstruction of the Trichinella complex

scientific article published in February 2016

Profiling circulating miRNAs in serum from pigs infected with the porcine whipworm, Trichuris suis.

scientific article published on 6 April 2016

Progress on the transcriptomics of carcinogenic liver flukes of humans--unique biological and biotechnological prospects

scientific article published on 29 July 2010

Proteogenomic analysis of the total and surface-exposed proteomes of Plasmodium vivax salivary gland sporozoites

scientific article

Proteomic analysis of the excretory-secretory products from larval stages of Ascaris suum reveals high abundance of glycosyl hydrolases

scientific article (publication date: 2013)

Proteomic diversity in a prevalent human-infective Giardia duodenalis sub-species

scientific article published on 29 July 2018

Rapid, multiplex-tandem PCR assay for automated detection and differentiation of toxigenic cyanobacterial blooms

scientific article published on 10 July 2013

Recent Progress in Transcriptomics of Key Gastrointestinal Nematodes of Animals - Fundamental Research Toward New Intervention Strategies

Recent advances in candidate-gene and whole-genome approaches to the discovery of anthelmintic resistance markers and the description of drug/receptor interactions.

scientific article

Recent advances in the genomic and molecular biology of Giardia.

scientific article published on 6 September 2017

Responses of the Differentiated Intestinal Epithelial Cell Line Caco-2 to Infection With the Giardia intestinalis GS Isolate.

scientific article published on 16 July 2018

Sequencing and annotation of mitochondrial genomes from individual parasitic helminths

scientific article published in January 2015

Single-strand conformation polymorphism (SSCP) for the analysis of genetic variation

scientific article published in January 2007

Soil-transmitted helminths of humans in Southeast Asia--towards integrated control.

scientific article published on January 2011

Specific and genotypic identification of Cryptosporidium from a broad range of host species by nonisotopic SSCP analysis of nuclear ribosomal DNA.

scientific article published in August 2007

Techniques for the diagnosis of Fasciola infections in animals: room for improvement

scientific article published in January 2014

The Opisthorchis viverrini genome provides insights into life in the bile duct

scientific article published on 9 July 2014

The barber's pole worm CAP protein superfamily--A basis for fundamental discovery and biotechnology advances

scientific article published on 31 July 2015

The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus

scientific article

The importance of host ecology in thelastomatoid (Nematoda: Oxyurida) host specificity.

scientific article published on 3 May 2006

The mitochondrial genome of Aelurostrongylus abstrusus-diagnostic, epidemiological and systematic implications

scientific article published on 9 November 2012

The mitochondrial genome of Parascaris univalens--implications for a "forgotten" parasite

scientific article published on 4 September 2014

The mitochondrial genome of Protostrongylus rufescens - implications for population and systematic studies.

scientific article published on 12 September 2013

The mitochondrial genome of Toxocara canis

scientific article published on 6 August 2008

The mitochondrial genomes of Ancylostoma caninum and Bunostomum phlebotomum--two hookworms of animal health and zoonotic importance

scientific article

The small RNA complement of adult Schistosoma haematobium.

scientific article

The transcriptome of Trichuris suis--first molecular insights into a parasite with curative properties for key immune diseases of humans

scientific article published on 24 August 2011

Time-Course Study of the Transcriptome of Peripheral Blood Mononuclear Cells (PBMCs) from Sheep Infected with Fasciola hepatica

scientific article

Time-Dependent Transcriptional Changes in Axenic Giardia duodenalis Trophozoites

scientific article published on 4 December 2015

Toward next-generation sequencing of mitochondrial genomes--focus on parasitic worms of animals and biotechnological implications

scientific article published on January 2010

Transcriptional analysis identifies key genes involved in metabolism, fibrosis/tissue repair and the immune response against Fasciola hepatica in sheep liver.

scientific article published on 25 February 2015

Transcriptomic Resources for Parasitic Nematodes of Veterinary Importance

scientific article published on 24 October 2018

Transcriptomics Indicates Active and Passive Metronidazole Resistance Mechanisms in Three Seminal Giardia Lines.

scientific article published on 17 March 2017

TriTOX: A novel Trichomonas vaginalis assay platform for high-throughput screening of compound libraries

scientific article published on 10 February 2021

Unlocking the transcriptomes of two carcinogenic parasites, Clonorchis sinensis and Opisthorchis viverrini

scientific article published in 2010

Use of multiplexed tandem PCR to estimate the prevalence and intensity of Theileria orientalis infections in cattle

scientific article published on 28 February 2015

Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda).

scientific article published on 11 January 2008

Whole-genome sequence of Schistosoma haematobium

scientific article