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List of works by Yuri Wolf

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Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001
The COG database: an updated version includes eukaryotes

scientific article
Evolution and classification of the CRISPR-Cas systems

scientific article (publication date: June 2011)
An updated evolutionary classification of CRISPR-Cas systems

scientific article
The ecoresponsive genome of Daphnia pulex

scientific article
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

scientific article
Expanded microbial genome coverage and improved protein family annotation in the COG database

scientific article
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

scientific article
Selection in the evolution of gene duplications

scientific article
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems

scientific article published on October 22, 2015
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

scientific article
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

scientific article
The structure of the protein universe and genome evolution

scientific article
The role of lineage-specific gene family expansion in the evolution of eukaryotes

scientific article
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution

scientific article
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

scientific article
Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution

scientific article
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

scientific article
Diversity and evolution of class 2 CRISPR-Cas systems

scientific article
Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes

scientific article
Genome trees and the tree of life

scientific article
Comparative genomics of defense systems in archaea and bacteria

scientific article published on March 6, 2013
The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens

scientific article
Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution

scientific article
Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family

scientific article published on 21 September 2006
The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups

scientific article
A korarchaeal genome reveals insights into the evolution of the Archaea

scientific article
Search for a 'Tree of Life' in the thicket of the phylogenetic forest

scientific article
The cyanobacterial genome core and the origin of photosynthesis

scholarly article
Phylogenomics of prokaryotic ribosomal proteins

scientific article
Defense islands in bacterial and archaeal genomes and prediction of novel defense systems

scientific article
Computational methods for Gene Orthology inference

scientific article
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

scientific article
Genome reduction as the dominant mode of evolution

scientific article published on 25 June 2013
The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages

scientific article (publication date: 5 May 2009)
Duplicated genes evolve slower than singletons despite the initial rate increase

scientific article
No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly

scientific article
Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell

scientific article
Conservation and coevolution in the scale-free human gene coexpression network

scientific article published on 28 July 2004
The deep archaeal roots of eukaryotes

scientific article
Connected gene neighborhoods in prokaryotic genomes

scientific article
A universal trend of amino acid gain and loss in protein evolution

scientific article published on 19 January 2005
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks

scientific article
Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

scientific article published on 14 December 2012
Small proteins can no longer be ignored

scientific article
Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia

scientific article
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches

scientific article (publication date: 15 June 2010)
Photosystem I gene cassettes are present in marine virus genomes

scientific article
The origins of phagocytosis and eukaryogenesis

scientific article
Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus

scientific article

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