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List of works by Goksel Misirli

A Computational Workflow for the Automated Generation of Models of Genetic Designs

scientific article published on 05 June 2018

A Genetic Circuit Compiler: Generating Combinatorial Genetic Circuits with Web Semantics and Inference

scientific article published on 20 November 2018

A standard-enabled workflow for synthetic biology

scientific article published on June 2017

Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization

scientific article

BacillusRegNet: a transcriptional regulation database and analysis platform for Bacillus species

scientific article published on 8 July 2014

Data Integration and Mining for Synthetic Biology Design

scientific article

Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits

scientific article published in January 2010

Model annotation for synthetic biology: automating model to nucleotide sequence conversion

scientific article

Proposed data model for the next version of the synthetic biology open language

scientific article

Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins

scientific article published on 27 October 2013

SBML Level 3 Package Proposal: Annotation

SBOL Visual 2 Ontology

scientific article published on 08 April 2020

SBOL-OWL: An Ontological Approach for Formal and Semantic Representation of Synthetic Biology Information

scientific article published on 14 May 2019

Sharing Structure and Function in Biological Design with SBOL 2.0.

scientific article published on 25 April 2016

ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL)

scientific article published on 23 March 2020

Standard virtual biological parts: a repository of modular modeling components for synthetic biology

scientific article

SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology

scientific article published on 9 January 2018

Synthetic Biology Open Language (SBOL) Version 2.0.0.

scientific article published on 04 September 2015

Synthetic Biology Open Language (SBOL) Version 2.1.0.

scientific article published on 18 December 2016

Synthetic Biology Open Language (SBOL) Version 2.2.0.

scientific article published on 2 April 2018

Synthetic Biology Open Language (SBOL) Version 2.3.

scientific article published on 13 June 2019

Synthetic biology open language (SBOL) version 3.0.0.

scientific article published on 25 June 2020

Synthetic biology open language visual (SBOL visual) version 2.2.

scientific article published on 10 June 2020

The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs

scientific article

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

scientific article

The synthetic biology open language

scientific article published on January 2015

VisBOL: Web-Based Tools for Synthetic Biology Design Visualization

scientific article published on 25 January 2016

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