List of works - Christopher W Schadt

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization

scientific article (publication date: 2016)

A limited microbial consortium is responsible for extended bioreduction of uranium in a contaminated aquifer

scientific article

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees

scientific article

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

scientific article

Afforestation alters the composition of functional genes in soil and biogeochemical processes in South American grasslands

scientific article published on 21 August 2009

An Integrative Model for Soil Biogeochemistry and Methane Processes: I. Model Structure and Sensitivity Analysis

scientific article published on 13 July 2021

Assembly of the <i>Populus</i> Microbiome Is Temporally Dynamic and Determined by Selective and Stochastic Factors

scientific article published on 09 June 2021

Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome

scientific article

Beyond the usual suspects: methanogenic communities in eastern North American peatlands are also influenced by nickel and copper concentrations

scientific article published in 2021

Bioavailability-Based In Situ Remediation To Meet Future Lead (Pb) Standards in Urban Soils and Gardens.

scientific article

Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires

scientific article published in 2024

Changes in bacterial community structure correlate with initial operating conditions of a field-scale denitrifying fluidized bed reactor.

scientific article published on 15 November 2005

Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees

scientific article published in 2017

Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology

scientific article published on 16 June 2021

Climate-driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools

scientific article published on 18 January 2019

Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide

scientific article

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.

scientific article published on 11 January 2017

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

scientific article

Constraints on microbial communities, decomposition and methane production in deep peat deposits

scientific article published on 06 February 2020

Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site

scientific article

Detection and Diversity of Fungal Nitric Oxide Reductase Genes (p450nor) in Agricultural Soils

scientific article

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types

scientific article

Divergent Responses of Forest Soil Microbial Communities under Elevated CO2 in Different Depths of Upper Soil Layers.

scientific article published on 27 October 2017

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

scientific article

Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere

scientific article

Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

scientific article

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction.

scientific article published on 10 April 2015

Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer.

scientific article

Effects of soil type and farm management on soil ecological functional genes and microbial activities

scientific article

Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities

scientific article published on 28 September 2015

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.

scientific article published on 15 July 2016

Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments

scientific article

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

scientific article

FUNGAL BIOGEOGRAPHY. Comment on "Global diversity and geography of soil fungi".

scientific article published on June 2015

Fruit and soil quality of organic and conventional strawberry agroecosystems

scientific article

Functional Gene Array-Based Analysis of Microbial Community Structure in Groundwaters with a Gradient of Contaminant Levels

article

Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition

scientific article published on 10 June 2019

Fungal-Bacterial Networks in the Rhizobiome Are Impacted by Soil Properties and Host Genotype

scientific article published on 29 March 2019

GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes.

scientific article

In situ bioremediation of uranium with emulsified vegetable oil as the electron donor.

scientific article published on 4 June 2013

Intensified Soil Moisture Extremes Decrease Soil Organic Carbon Decomposition: A Mechanistic Modeling Analysis

scientific article published in 2021

Labile soil carbon inputs mediate the soil microbial community composition and plant residue decomposition rates ⬇️

scientific article published on September 6, 2010

Linking Associations of Rare Low-Abundance Species to Their Environments by Association Networks.

scientific article

Long-term nitrogen fertilization decreases bacterial diversity and favors the growth of Actinobacteria and Proteobacteria in agro-ecosystems across the globe.

scientific article published on 12 April 2018

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes.

scientific article published on 19 September 2011

Methane emissions from tree stems: a new frontier in the global carbon cycle

article published in 2018

Methanogenic Archaea dominate mature heartwood habitats of Eastern Cottonwood (Populus deltoides)

scientific article published on 06 July 2018

Microarray-based analysis of microbial community RNAs by whole-community RNA amplification.

scientific article published on 10 November 2006

Microbial community stratification linked to utilization of carbohydrates and phosphorus limitation in a boreal peatland at Marcell Experimental Forest, Minnesota, USA

scientific article (publication date: June 2014)

Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp

scientific article published on 20 January 2012

Microbial diversity and bioremediation of a hydrocarbon-contaminated aquifer (Vega Baja, Puerto Rico).

scientific article published on September 2006

Microbial dormancy improves development and experimental validation of ecosystem model

scientific article

Microbial functional genes commonly respond to elevated carbon dioxide

scientific article published on 29 August 2020

Microbial metabolic potential for carbon degradation and nutrient (nitrogen and phosphorus) acquisition in an ombrotrophic peatland

scientific article

Molybdenum-based diazotrophy in a Sphagnum peatland in northern Minnesota.

scientific article published on 30 June 2017

Multi-year incubation experiments boost confidence in model projections of long-term soil carbon dynamics

scientific article published on 17 November 2020

Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts

scientific article published on 06 July 2021

Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

scientific article published on 14 July 2015

New North American truffles (Tuber spp.) and their ectomycorrhizal associations

scientific article

One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation.

scientific article published on 18 June 2019

Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome ⬇️

scientific article published on September 12, 2011

Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives

scientific article published on 06 January 2021

Phylogenomics Reveal the Dynamic Evolution of Fungal Nitric Oxide Reductases and Their Relationship to Secondary Metabolism

scientific article published in 2018

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

scientific article published in July 2014

Plant–Microbe Interactions: From Genes to Ecosystems Using <i>Populus</i> as a Model System

scientific article published in 2021

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

scientific article published in June 2012

Representation of dormant and active microbial dynamics for ecosystem modeling

scientific article

Response of the soil microbial community to changes in precipitation in a semiarid ecosystem

scientific article

Responses of soil cellulolytic fungal communities to elevated atmospheric CO₂ are complex and variable across five ecosystems.

scientific article

Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin

article

Seasonal dynamics of previously unknown fungal lineages in tundra soils.

scientific article

Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production

scientific article

Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment

scientific article published in 2021

Soil microbial community responses to multiple experimental climate change drivers

scientific article

Spatial scaling of functional gene diversity across various microbial taxa.

scientific article

Stability of peatland carbon to rising temperatures.

scientific article published on 13 December 2016

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome

scientific article published on 12 February 2018

The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling.

scientific article

Towards a holistic understanding of the beneficial interactions across the Populus microbiome.

scientific article

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides

scientific article

U(VI) Bioreduction with Emulsified Vegetable Oil as the Electron Donor – Model Application to a Field Test

article

U(VI) bioreduction with emulsified vegetable oil as the electron donor--microcosm tests and model development.

scientific article

Variability in soil properties at different spatial scales (1m–1km) in a deciduous forest ecosystem

Variation in carbon and nitrogen concentrations among peatland categories at the global scale

scientific article published in 2022

Watershed-scale fungal community characterization along a pH gradient in a subsurface environment cocontaminated with uranium and nitrate.

scientific article

List of works by Christopher W Schadt

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization

A limited microbial consortium is responsible for extended bioreduction of uranium in a contaminated aquifer

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

Afforestation alters the composition of functional genes in soil and biogeochemical processes in South American grasslands

An Integrative Model for Soil Biogeochemistry and Methane Processes: I. Model Structure and Sensitivity Analysis

Assembly of the <i>Populus</i> Microbiome Is Temporally Dynamic and Determined by Selective and Stochastic Factors

Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome

Beyond the usual suspects: methanogenic communities in eastern North American peatlands are also influenced by nickel and copper concentrations

Bioavailability-Based In Situ Remediation To Meet Future Lead (Pb) Standards in Urban Soils and Gardens.

Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires

Changes in bacterial community structure correlate with initial operating conditions of a field-scale denitrifying fluidized bed reactor.

Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees

Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology

Climate-driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools

Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

Constraints on microbial communities, decomposition and methane production in deep peat deposits

Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site

Detection and Diversity of Fungal Nitric Oxide Reductase Genes (p450nor) in Agricultural Soils

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types

Divergent Responses of Forest Soil Microbial Communities under Elevated CO2 in Different Depths of Upper Soil Layers.

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere

Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction.

Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer.

Effects of soil type and farm management on soil ecological functional genes and microbial activities

Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.

Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

FUNGAL BIOGEOGRAPHY. Comment on "Global diversity and geography of soil fungi".

Fruit and soil quality of organic and conventional strawberry agroecosystems

Functional Gene Array-Based Analysis of Microbial Community Structure in Groundwaters with a Gradient of Contaminant Levels

Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition

Fungal-Bacterial Networks in the Rhizobiome Are Impacted by Soil Properties and Host Genotype

GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes.

In situ bioremediation of uranium with emulsified vegetable oil as the electron donor.

Intensified Soil Moisture Extremes Decrease Soil Organic Carbon Decomposition: A Mechanistic Modeling Analysis

Labile soil carbon inputs mediate the soil microbial community composition and plant residue decomposition rates ⬇️

Linking Associations of Rare Low-Abundance Species to Their Environments by Association Networks.

Long-term nitrogen fertilization decreases bacterial diversity and favors the growth of Actinobacteria and Proteobacteria in agro-ecosystems across the globe.

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes.

Methane emissions from tree stems: a new frontier in the global carbon cycle

Methanogenic Archaea dominate mature heartwood habitats of Eastern Cottonwood (Populus deltoides)

Microarray-based analysis of microbial community RNAs by whole-community RNA amplification.

Microbial community stratification linked to utilization of carbohydrates and phosphorus limitation in a boreal peatland at Marcell Experimental Forest, Minnesota, USA

Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp

Microbial diversity and bioremediation of a hydrocarbon-contaminated aquifer (Vega Baja, Puerto Rico).

Microbial dormancy improves development and experimental validation of ecosystem model

Microbial functional genes commonly respond to elevated carbon dioxide

Microbial metabolic potential for carbon degradation and nutrient (nitrogen and phosphorus) acquisition in an ombrotrophic peatland

Molybdenum-based diazotrophy in a Sphagnum peatland in northern Minnesota.

Multi-year incubation experiments boost confidence in model projections of long-term soil carbon dynamics

Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts

Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

New North American truffles (Tuber spp.) and their ectomycorrhizal associations

One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation.

Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome ⬇️

Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives

Phylogenomics Reveal the Dynamic Evolution of Fungal Nitric Oxide Reductases and Their Relationship to Secondary Metabolism

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

Plant–Microbe Interactions: From Genes to Ecosystems Using <i>Populus</i> as a Model System

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

Representation of dormant and active microbial dynamics for ecosystem modeling

Response of the soil microbial community to changes in precipitation in a semiarid ecosystem

Responses of soil cellulolytic fungal communities to elevated atmospheric CO₂ are complex and variable across five ecosystems.

Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin

Seasonal dynamics of previously unknown fungal lineages in tundra soils.

Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production

Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment

Soil microbial community responses to multiple experimental climate change drivers

Spatial scaling of functional gene diversity across various microbial taxa.

Stability of peatland carbon to rising temperatures.

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome

The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling.

Towards a holistic understanding of the beneficial interactions across the Populus microbiome.