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List of works by Elisa Ficarra

A Deep Learning Approach to the Screening of Oncogenic Gene Fusions in Humans ⬇️

article

A Novel Gaussian Extrapolation Approach for 2-D Gel Electrophoresis Saturated Protein Spots.

scientific article published in January 2016

A molecular dynamics study of a miRNA:mRNA interaction.

scientific article published on 12 February 2011

A novel Gaussian extrapolation approach for 2D gel electrophoresis saturated protein spots.

scientific article published on 7 November 2012

ANAlyte: A modular image analysis tool for ANA testing with indirect immunofluorescence.

scientific article published on 2 March 2016

Acceleration of coarse grain molecular dynamics on GPU architectures ⬇️

scientific article published on December 28, 2012

Achieving the way for automated segmentation of nuclei in cancer tissue images through morphology-based approach: a quantitative evaluation

scientific article published on 08 January 2010

An automated approach to the segmentation of HEp-2 cells for the indirect immunofluorescence ANA test

scientific article published on 6 January 2015

Automated segmentation of cells with IHC membrane staining.

scientific article published on 17 January 2011

Automated segmentation of tissue images for computerized IHC analysis.

scientific article published in April 2010

Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model

scientific article

Computational Methods for CLIP-seq Data Processing

scientific article

Computer-aided techniques for chromogenic immunohistochemistry: Status and directions ⬇️

scientific article published on September 13, 2012

Convergent Mutations and Kinase Fusions Lead to Oncogenic STAT3 Activation in Anaplastic Large Cell Lymphoma

Convergent mutations and kinase fusions lead to oncogenic STAT3 activation in anaplastic large cell lymphoma.

scientific article

Exploiting Gene Expression Profiles for the Automated Prediction of Connectivity between Brain Regions

article

FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples.

scientific article

FunMod: a Cytoscape plugin for identifying functional modules in undirected protein-protein networks

scientific article

Gelsius: a literature-based workflow for determining quantitative associations between genes and biological processes

scientific article published on May 2013

MicroRNA-mRNA interactions underlying colorectal cancer molecular subtypes.

scientific article

Mining textural knowledge in biological images: Applications, methods and trends

scientific article

Multiscale modeling of cellular actin filaments: from atomistic molecular to coarse-grained dynamics

scientific article published on 13 March 2012

One Decade of Development and Evolution of MicroRNA Target Prediction Algorithms ⬇️

scientific article published on October 23, 2012

Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer.

scientific article

Predicting gene expression levels from DNA sequences and post-transcriptional information with transformers

scientific article published in 2022

RALE051: a novel established cell line of sporadic Burkitt lymphoma

scientific article published on 11 September 2017

Selective analysis of cancer-cell intrinsic transcriptional traits defines novel clinically relevant subtypes of colorectal cancer

scientific article published on 31 May 2017

Unsupervised HEp-2 mitosis recognition in indirect immunofluorescence imaging.

scientific article published in August 2015

VDJSeq-Solver: in silico V(D)J recombination detection tool

scientific article published on 23 March 2015

isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation

scientific article

miREE: miRNA recognition elements ensemble

scientific article

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