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List of works by Danesh Moradigaravand

Adaptation through genetic time travel? Fluctuating selection can drive the evolution of bacterial transformation.

scientific article published on 27 November 2013

Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland

scientific article published on 21 February 2017

Evolution of the Staphylococcus argenteus ST2250 Clone in Northeastern Thailand Is Linked with the Acquisition of Livestock-Associated Staphylococcal Genes

scientific article

Genomic survey of Clostridium difficile reservoirs in the East of England implicates environmental contamination of wastewater treatment plants by clinical lineages.

scientific article

Machine Learning Prediction of Resistance to Subinhibitory Antimicrobial Concentrations from Escherichia coli Genomes

scientific article published in 2021

Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning

scientific article published in 2023

Population structure of multidrug resistant Klebsiella oxytoca within hospitals across the UK and Ireland identifies sharing of virulence and resistance genes with K. pneumoniae

scientific article published on 8 February 2017

Precise prediction of antibiotic resistance in Escherichia coli from full genome sequences

scholarly article published 4 June 2018

Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data

scholarly article by Danesh Moradigaravand et al published December 2018 in PLOS Computational Biology

Recent independent emergence of multiple multidrug-resistant Serratia marcescens clones within the United Kingdom and Ireland

scientific article published on 18 July 2016

Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1

scientific article (publication date: June 2014)

Reply to Dookie et al., "Whole-Genome Sequencing To Guide the Selection of Treatment for Drug-Resistant Tuberculosis"

scientific article published on 27 July 2018

Role of alanine racemase mutations in Mycobacterium tuberculosis D-cycloserine resistance

scientific article published on 2 October 2017

Some Synonymous and Nonsynonymous gyrA Mutations in Mycobacterium tuberculosis Lead to Systematic False-Positive Fluoroquinolone Resistance Results with the Hain GenoType MTBDRsl Assays

scientific article published on 30 January 2017

The dissemination of multidrug-resistant Enterobacter cloacae throughout the UK and Ireland

scientific article published on 26 September 2016

The effect of bacterial recombination on adaptation on fitness landscapes with limited peak accessibility

scientific article

The essential mycobacterial amidotransferase GatCAB is a modulator of specific translational fidelity.

scientific article

The evolution of natural competence: disentangling costs and benefits of sex in bacteria.

scientific article published on 20 August 2013

The impact of natural transformation on adaptation in spatially structured bacterial populations.

scientific article

What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis.

scientific article

Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae

scientific article published on 24 January 2017

Whole-genome sequencing of multidrug-resistant Mycobacterium tuberculosis isolates from Myanmar

scientific article published on 30 May 2016

Wild-Type and Non-Wild-Type Mycobacterium tuberculosis MIC Distributions for the Novel Fluoroquinolone Antofloxacin Compared with Those for Ofloxacin, Levofloxacin, and Moxifloxacin

scientific article published on 20 June 2016

Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

scientific article published on 27 December 2017

dfrA thyA Double Deletion in para-Aminosalicylic Acid-Resistant Mycobacterium tuberculosis Beijing Strains

scientific article published on 28 March 2016

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