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List of works by Adrian Shepherd

A computational analysis of the antigenic properties of haemagglutinin in influenza A H3N2.

scientific article

A large-scale computational study of inhibitor risk in non-severe haemophilia A.

scientific article published on 22 September 2014

A novel approach to the recognition of protein architecture from sequence using Fourier analysis and neural networks

scientific article

A realistic assessment of methods for extracting gene/protein interactions from free text

scientific article published on 28 July 2009

A text-mining system for extracting metabolic reactions from full-text articles.

scientific article

An analysis of B-cell epitope discontinuity ⬇️

scientific article published on April 20, 2012

An entropic safety catch controls Hepatitis C virus entry and antibody resistance

scientific article published on 07 July 2022

An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs. ⬇️

scientific article

Analysis of antigenically important residues in human influenza A virus in terms of B-cell epitopes.

scientific article

Benchmarking natural-language parsers for biological applications using dependency graphs.

scientific article

Characterization of the UK anthrax vaccine and human immunogenicity

scientific article published on 08 September 2020

Evaluation of a novel multi-immunogen vaccine strategy for targeting 4E10/10E8 neutralizing epitopes on HIV-1 gp41 membrane proximal external region.

scientific article published on 23 February 2017

Evolution in the influenza A H3 stalk - a challenge for broad-spectrum vaccines?

scientific article published on November 2013

Factor VIII cross-matches to the human proteome reduce the predicted inhibitor risk in missense mutation hemophilia A

scientific article published on 28 September 2018

Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein

scientific article published on 28 February 2020

Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database

scientific article

HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1

scientific article published on 06 July 2016

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization

scientific article published on May 2009

ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale

scientific article published on June 2010

Increased epitope complexity correlated with antibody affinity maturation and a novel binding mode revealed by structures of rabbit antibodies against the third variable loop (V3) of HIV-1 gp120.

scientific article published on 17 January 2018

Investigating Substitutions in Antibody-Antigen Complexes Using Molecular Dynamics: A Case Study with Broad-spectrum, Influenza A Antibodies.

scientific article published on 15 February 2017

Metabolic Pathway Mining.

scientific article published in January 2017

Mining biological networks from full-text articles

scientific article published on January 2014

Missed, Not Missing: Phylogenomic Evidence for the Existence of Avian FoxP3.

scientific article

N-linked glycans on influenza A H3N2 hemagglutinin constrain binding of host antibodies, but shielding is limited

scientific article published on 16 September 2014

OGRDB: a reference database of inferred immune receptor genes

scientific article published on 01 January 2020

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources

scientific article

Prediction of the location and type of beta-turns in proteins using neural networks.

scientific article published on May 1999

Studying Antibody Repertoires with Next-Generation Sequencing

scientific article published on January 2017

Text mining.

scientific article published in January 2008

The CATH database: an extended protein family resource for structural and functional genomics

scientific article

The CATH extended protein-family database: providing structural annotations for genome sequences.

scientific article

The New ERA in Supervised Learning.

scientific article published in March 1997

Toward predicting protein topology: an approach to identifying beta hairpins.

scientific article

Utilities for High-Throughput Analysis of B-Cell Clonal Lineages.

scientific article published on 7 October 2015

VDJbase: an adaptive immune receptor genotype and haplotype database

scientific article published on 01 January 2020

sumrep: A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model Validation

scientific article published on 01 November 2019

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