List of works - Mathieu Lavallée-Adam

A complex of C9ORF72 and p62 uses arginine methylation to eliminate stress granules by autophagy

scientific article published in Nature Communications

A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity

scientific article

Amyloid Accumulation Drives Proteome-wide Alterations in Mouse Models of Alzheimer's Disease-like Pathology.

scientific article

Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome

scientific article published on 06 September 2019

Computational Identification of Human Biological Processes and Protein Sequence Motifs Putatively Targeted by SARS-CoV-2 Proteins Using Protein-Protein Interaction Networks

scientific article published on 26 October 2020

Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers

scientific article published on 14 August 2015

Detection of locally over-represented GO terms in protein-protein interaction networks

scientific article

Discovery of cell compartment specific protein-protein interactions using affinity purification combined with tandem mass spectrometry

scientific article published on 4 December 2012

From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics

scientific article

Functional 5' UTR motif discovery with LESMoN: Local Enrichment of Sequence Motifs in biological Networks

scientific article

High infestation levels of Schizotetranychus oryzae severely affects rice metabolism

scientific article published on 28 October 2017

High-resolution mapping of the protein interaction network for the human transcription machinery and affinity purification of RNA polymerase II-associated complexes

scientific article published on 18 May 2009

Increased proteomic complexity in Drosophila hybrids during development.

scientific article published on 7 February 2018

Methylation of the DNA/RNA-binding protein Kin17 by METTL22 affects its association with chromatin.

scientific article published on 16 October 2013

Modeling contaminants in AP-MS/MS experiments

scientific article published on 31 December 2010

Nuclear import of RNA polymerase II is coupled with nucleocytoplasmic shuttling of the RNA polymerase II-associated protein 2

scientific article published on 30 May 2013

PSEA-Quant: a protein set enrichment analysis on label-free and label-based protein quantification data

scientific article

Physiological and Molecular Alterations Promoted by Schizotetranychus oryzae Mite Infestation in Rice Leaves

scientific article published on 15 December 2015

Proteomic and Metaproteomic Approaches to Understand Host-Microbe Interactions.

scientific article

Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results

scientific article published on 01 July 2019

Proteomics characterization of mitochondrial-derived vesicles under oxidative stress

scientific article published on 01 April 2021

Quantitative Analysis of the Proteome Response to the Histone Deacetylase Inhibitor (HDACi) Vorinostat in Niemann-Pick Type C1 disease.

scientific article published on 31 August 2017

Quantitative Proteomics of Human Fibroblasts with I1061T Mutation in Niemann-Pick C1 (NPC1) Protein Provides Insights into the Disease Pathogenesis

scientific article

Recessive mutations in POLR1C cause a leukodystrophy by impairing biogenesis of RNA polymerase III.

scientific article published on 7 July 2015

Sheathless capillary electrophoresis-tandem mass spectrometry for top-down characterization of Pyrococcus furiosus proteins on a proteome scale

scientific article

Studying the Temporal Dynamics of the Gut Microbiota Using Metabolic Stable Isotope Labeling and Metaproteomics

scientific article published on 30 November 2020

TargetSeeker-MS: A computational method for drug target discovery using protein separation coupled to mass spectrometry

The Sorting Receptor SorCS1 Regulates Trafficking of Neurexin and AMPA Receptors.

scientific article published in August 2015

The protein interaction network of the human transcription machinery reveals a role for the conserved GTPase RPAP4/GPN1 and microtubule assembly in nuclear import and biogenesis of RNA polymerase II

scientific article published on 20 September 2010

Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics

scientific article published on 24 March 2016

∆F508 CFTR interactome remodelling promotes rescue of cystic fibrosis

scientific article

List of works by Mathieu Lavallée-Adam

A complex of C9ORF72 and p62 uses arginine methylation to eliminate stress granules by autophagy

A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity

Amyloid Accumulation Drives Proteome-wide Alterations in Mouse Models of Alzheimer's Disease-like Pathology.

Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome

Computational Identification of Human Biological Processes and Protein Sequence Motifs Putatively Targeted by SARS-CoV-2 Proteins Using Protein-Protein Interaction Networks

Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers

Detection of locally over-represented GO terms in protein-protein interaction networks

Discovery of cell compartment specific protein-protein interactions using affinity purification combined with tandem mass spectrometry

From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics

Functional 5' UTR motif discovery with LESMoN: Local Enrichment of Sequence Motifs in biological Networks

High infestation levels of Schizotetranychus oryzae severely affects rice metabolism

High-resolution mapping of the protein interaction network for the human transcription machinery and affinity purification of RNA polymerase II-associated complexes

Increased proteomic complexity in Drosophila hybrids during development.

Methylation of the DNA/RNA-binding protein Kin17 by METTL22 affects its association with chromatin.

Modeling contaminants in AP-MS/MS experiments

Nuclear import of RNA polymerase II is coupled with nucleocytoplasmic shuttling of the RNA polymerase II-associated protein 2

PSEA-Quant: a protein set enrichment analysis on label-free and label-based protein quantification data

Physiological and Molecular Alterations Promoted by Schizotetranychus oryzae Mite Infestation in Rice Leaves

Proteomic and Metaproteomic Approaches to Understand Host-Microbe Interactions.

Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results

Proteomics characterization of mitochondrial-derived vesicles under oxidative stress

Quantitative Analysis of the Proteome Response to the Histone Deacetylase Inhibitor (HDACi) Vorinostat in Niemann-Pick Type C1 disease.

Quantitative Proteomics of Human Fibroblasts with I1061T Mutation in Niemann-Pick C1 (NPC1) Protein Provides Insights into the Disease Pathogenesis

Recessive mutations in POLR1C cause a leukodystrophy by impairing biogenesis of RNA polymerase III.

Sheathless capillary electrophoresis-tandem mass spectrometry for top-down characterization of Pyrococcus furiosus proteins on a proteome scale

Studying the Temporal Dynamics of the Gut Microbiota Using Metabolic Stable Isotope Labeling and Metaproteomics

TargetSeeker-MS: A computational method for drug target discovery using protein separation coupled to mass spectrometry

The Sorting Receptor SorCS1 Regulates Trafficking of Neurexin and AMPA Receptors.

The protein interaction network of the human transcription machinery reveals a role for the conserved GTPase RPAP4/GPN1 and microtubule assembly in nuclear import and biogenesis of RNA polymerase II

Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics

∆F508 CFTR interactome remodelling promotes rescue of cystic fibrosis