List of works - Arjun Krishnan

A Computational Framework for Genome-wide Characterization of the Human Disease Landscape

scientific article published on 23 January 2019

A flexible, interpretable, and accurate approach for imputing the expression of unmeasured genes

scientific article published on 19 October 2020

A loop-counting method for covariate-corrected low-rank biclustering of gene-expression and genome-wide association study data.

scientific article published on 14 May 2018

Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice

scientific article

Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress

scientific article

Current and future directions in network biology

scientific article published in 2024

Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq

scientific article

FNTM: a server for predicting functional networks of tissues in mouse

scientific article published on 4 May 2015

Functional assessment of the "two-hit" model for neurodevelopmental defects in Drosophila and X. laevis

scientific article published on 05 April 2021

GIANT 2.0: genome-scale integrated analysis of gene networks in tissues.

scientific article published in July 2018

Genome-wide characterization of genetic and functional dysregulation in autism spectrum disorder

scholarly article published 9 June 2016

Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder

scientific article

IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.

scientific article published on 12 May 2015

Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene.

scholarly article

Integrative approaches for mining transcriptional regulatory programs in Arabidopsis

scientific article

Integrative networks illuminate biological factors underlying gene-disease associations

Low-variance RNAs identify Parkinson's disease molecular signature in blood

scientific article published on 18 March 2015

Microarray data analysis.

scientific article

Molecular and physiological analysis of drought stress in Arabidopsis reveals early responses leading to acclimation in plant growth

scientific article published on 31 August 2010

Mutant resources in rice for functional genomics of the grasses

scientific article

Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies

scientific article published on 12 September 2013

PecanPy: a fast, efficient and parallelized Python implementation of node2vec

scientific article published on 23 March 2021

Pervasive genetic interactions modulate neurodevelopmental defects of the autism-associated 16p11.2 deletion in Drosophila melanogaster.

scientific article

PyGenePlexus: a Python package for gene discovery using network-based machine learning

scientific article published in 2023

RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response

RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response.

scientific article published on 20 September 2017

Rare variants in the genetic background modulate cognitive and developmental phenotypes in individuals carrying disease-associated variants

scientific article published on 7 September 2018

Reconciling differential gene expression data with molecular interaction networks

scientific article

Renewal-Reward Process Formulation of Motor Protein Dynamics ⬇️

scientific article published on February 17, 2011

Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions

scientific article

Supervised-learning is an accurate method for network-based gene classification

scientific article published on 04 March 2020

Systematic tissue annotations of genomics samples by modeling unstructured metadata

scientific article published in 2022

Systematic tissue annotations of –omics samples by modeling unstructured metadata

scientific article

Targeted exploration and analysis of large cross-platform human transcriptomic compendia

scientific article published on 12 January 2015

Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms

scientific article

Understanding multicellular function and disease with human tissue-specific networks

scientific article published on 27 April 2015

List of works by Arjun Krishnan

A Computational Framework for Genome-wide Characterization of the Human Disease Landscape

A flexible, interpretable, and accurate approach for imputing the expression of unmeasured genes

A loop-counting method for covariate-corrected low-rank biclustering of gene-expression and genome-wide association study data.

Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice

Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress

Current and future directions in network biology

Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq

FNTM: a server for predicting functional networks of tissues in mouse

Functional assessment of the "two-hit" model for neurodevelopmental defects in Drosophila and X. laevis

GIANT 2.0: genome-scale integrated analysis of gene networks in tissues.

Genome-wide characterization of genetic and functional dysregulation in autism spectrum disorder

Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder

IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.

Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene.

Integrative approaches for mining transcriptional regulatory programs in Arabidopsis

Integrative networks illuminate biological factors underlying gene-disease associations

Low-variance RNAs identify Parkinson's disease molecular signature in blood

Microarray data analysis.

Molecular and physiological analysis of drought stress in Arabidopsis reveals early responses leading to acclimation in plant growth

Mutant resources in rice for functional genomics of the grasses

Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies

PecanPy: a fast, efficient and parallelized Python implementation of node2vec

Pervasive genetic interactions modulate neurodevelopmental defects of the autism-associated 16p11.2 deletion in Drosophila melanogaster.

PyGenePlexus: a Python package for gene discovery using network-based machine learning

RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response

RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response.

Rare variants in the genetic background modulate cognitive and developmental phenotypes in individuals carrying disease-associated variants

Reconciling differential gene expression data with molecular interaction networks

Renewal-Reward Process Formulation of Motor Protein Dynamics ⬇️

Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions

Supervised-learning is an accurate method for network-based gene classification

Systematic tissue annotations of genomics samples by modeling unstructured metadata

Systematic tissue annotations of –omics samples by modeling unstructured metadata

Targeted exploration and analysis of large cross-platform human transcriptomic compendia

Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms

Understanding multicellular function and disease with human tissue-specific networks