List of works - Madeleine J. H. van Oppen

A PCR-Based Assay Targeting the Major Capsid Protein Gene of a Dinorna-Like ssRNA Virus That Infects Coral Photosymbionts

scientific article

A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization

article

A multilocus, temperature stress-related gene expression profile assay in Acropora millepora, a dominant reef-building coral

article

A population genetic assessment of coral recovery on highly disturbed reefs of the Keppel Island archipelago in the southern Great Barrier Reef

scientific article published on 23 July 2015

A rapid genetic assay for the identification of the most common Pocillopora damicornis genetic lineages on the Great Barrier Reef

scientific article

Adaptation to reef habitats through selection on the coral animal and its associated microbiome

scientific article published on 30 June 2018

Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats

scientific article

Antibiotics reduce bacterial load in Exaiptasia diaphana, but biofilms hinder its development as a gnotobiotic coral model

scientific article published on 24 January 2022

Antimicrobial and stress responses to increased temperature and bacterial pathogen challenge in the holobiont of a reef-building coral

scientific article published on 15 January 2018

Apparent involvement of a beta1 type integrin in coral fertilization

scientific article published on 13 August 2007

Asymmetric dispersal is a critical element of concordance between biophysical dispersal models and spatial genetic structure in Great Barrier Reef corals

scientific article published on 18 July 2019

Building coral reef resilience through assisted evolution.

scientific article

CRISPR-Cas Defense System and Potential Prophages in Cyanobacteria Associated with the Coral Black Band Disease

scientific article published on 22 December 2016

Chimerism in wild adult populations of the broadcast spawning coral Acropora millepora on the Great Barrier Reef

scientific article

Chromera velia is endosymbiotic in larvae of the reef corals Acropora digitifera and A. tenuis

scientific article

Colonization and metabolite profiles of homologous, heterologous and experimentally evolved algal symbionts in the sea anemone Exaiptasia diaphana

scientific article published on 30 March 2022

Comparative immune responses of corals to stressors associated with offshore reef-based tourist platforms

scientific article published on 24 July 2015

Congruent patterns of connectivity can inform management for broadcast spawning corals on the Great Barrier Reef

scientific article

Conservation genetics and the resilience of reef-building corals

scientific article

Contrasting patterns of genetic structure in two species of the coral trout Plectropomus (Serranidae) from east and west Australia: introgressive hybridisation or ancestral polymorphisms.

scientific article published on 10 May 2006

Coral adaptation to climate change: Meta‐analysis reveals high heritability across multiple traits

scientific article published on 05 September 2021

Coral microbiome dynamics, functions and design in a changing world

scientific article published on 01 July 2019

Coral-associated viral communities show high levels of diversity and host auxiliary functions

scientific article

Coral-the world's most diverse symbiotic ecosystem

scientific article published on 28 September 2015

Correction: Some Rare Indo-Pacific Coral Species Are Probable Hybrids

scientific article published in PLoS ONE

Correction: The Roles and Interactions of Symbiont, Host and Environment in Defining Coral Fitness.

scientific article published on 13 August 2009

Development of a free radical scavenging bacterial consortium to mitigate oxidative stress in cnidarians

scientific article published on 14 July 2021

Diverse associations among coral host haplotypes and algal endosymbionts may drive adaptation at geographically peripheral and ecologically marginal locations

Diversity and stability of coral endolithic microbial communities at a naturally high pCO2 reef

scientific article

Ecologically relevant dispersal of corals on isolated reefs: implications for managing resilience

scientific article published in January 2009

Eight microsatellite loci for the Irukandji syndrome-causing carybdeid jellyfish, Carukia barnesi (Cubozoa, Cnidaria).

scientific article

Engineering Strategies to Decode and Enhance the Genomes of Coral Symbionts

scientific article published on 30 June 2017

Environmental factors controlling the distribution of symbiodinium harboured by the coral Acropora millepora on the Great Barrier Reef

scientific article (publication date: 2011)

Estimating the potential for adaptation of corals to climate warming

scientific article

Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts

scientific article

Evidence for de novo acquisition of microalgal symbionts by bleached adult corals

scientific article published on 7 February 2022

Expanding the Symbiodinium (Dinophyceae, Suessiales) Toolkit Through Protoplast Technology.

scientific article

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

scientific article published on 19 April 2016

Expression of putative immune response genes during early ontogeny in the coral Acropora millepora

scientific article

Factors affecting the evolution of bleaching resistance in corals

scientific article published on February 2008

First frozen repository for the Great Barrier Reef coral created.

scientific article

Flexibility in algal endosymbioses shapes growth in reef corals

scientific article published on 01 June 2004

From cholera to corals: Viruses as drivers of virulence in a major coral bacterial pathogen

scientific article

Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts

scientific article published on 21 December 2023

Generating viral metagenomes from the coral holobiont

scientific article published on 7 May 2014

Genetic assignment of recruits reveals short- and long-distance larval dispersal in Pocillopora damicornis on the Great Barrier Reef

scientific article published on 8 November 2013

Genetic divergence across habitats in the widespread coral Seriatopora hystrix and its associated Symbiodinium

scientific article

Genetic diversity and connectivity in a brooding reef coral at the limit of its distribution

scientific article published on 26 August 2009

Genetic markers for antioxidant capacity in a reef-building coral

scientific article

Genetic traces of recent long-distance dispersal in a predominantly self-recruiting coral

scientific article

Genetic, morphological and growth characterisation of a new Roseofilum strain (Oscillatoriales, Cyanobacteria) associated with coral black band disease.

scientific article published on 09 June 2016

Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts

scientific article published on 27 November 2020

Genotype - environment correlations in corals from the Great Barrier Reef

scientific article

Geographic and habitat partitioning of genetically distinct zooxanthellae (Symbiodinium) in Acropora corals on the Great Barrier Reef.

scientific article

Heat-evolved microalgal symbionts increase coral bleaching tolerance

scientific article published on 13 May 2020

Heat‐evolved algal symbionts enhance bleaching tolerance of adult corals without trade‐off against growth

scientific article published in November 2023

High potential for formation and persistence of chimeras following aggregated larval settlement in the broadcast spawning coral, Acropora millepora

scientific article published on 13 July 2011

Highly infectious symbiont dominates initial uptake in coral juveniles.

scientific article

Highly structured prokaryote communities exist within the skeleton of coral colonies

scientific article published on 20 October 2017

Historical and contemporary factors shape the population genetic structure of the broadcast spawning coral, Acropora millepora, on the Great Barrier Reef.

scientific article published on 26 October 2011

Historical thermal regimes define limits to coral acclimatization

scientific article published on May 2013

HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts

scientific article published on 9 June 2016

Horizon scan of rapidly advancing coral restoration approaches for 21st century reef management

scientific article published on 04 February 2022

Host Coenzyme Q Redox State Is an Early Biomarker of Thermal Stress in the Coral Acropora millepora

scientific article published on October 2015

Impact of light and temperature on the uptake of algal symbionts by coral juveniles

scientific article

Intra-genomic variation in symbiotic dinoflagellates: recent divergence or recombination between lineages?

scientific article

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

scientific article published on 08 February 2021

KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome.

scientific article

Maternal effects in gene expression of interspecific coral hybrids

scientific article published on 11 November 2020

Metagenomic characterisation of viral communities in corals: Mining biological signal from methodological noise

scientific article

Metagenomic characterization of viral communities in corals: mining biological signal from methodological noise.

scientific article published on 24 February 2015

Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana

scientific article published on 21 May 2021

Microsatellite allele sizes alone are insufficient to delineate species boundaries in Symbiodinium.

scientific article published on 18 May 2016

Molecular delineation of species in the coral holobiont

scientific article

New interventions are needed to save coral reefs

scientific article published on 01 October 2017

Niche specialization of reef-building corals in the mesophotic zone: metabolic trade-offs between divergent Symbiodinium types.

scientific article published on 24 November 2010

Novel T4 bacteriophages associated with black band disease in corals

scientific article published on 12 November 2018

Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny.

scientific article

Parental and early life stage environments drive establishment of bacterial and dinoflagellate communities in a common coral

scientific article published on 31 January 2019

Patterns of coral-dinoflagellate associations in Acropora: significance of local availability and physiology of Symbiodinium strains and host-symbiont selectivity

scientific article published on 01 September 2001

Patterns of gene expression in a scleractinian coral undergoing natural bleaching

scientific article

Persistence and change in community composition of reef corals through present, past, and future climates

scientific article

Perspective.

scientific article

Predictive models for the selection of thermally tolerant corals based on offspring survival

scientific article published on 29 March 2022

Prevalent and persistent viral infection in cultures of the coral algal endosymbiont Symbiodinium

article

Producing Coral Offspring with Cryopreserved Sperm: A Tool for Coral Reef Restoration.

scientific article

Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora

scientific article published on 30 May 2003

Pushing the limits: expanding the temperature tolerance of a coral photosymbiont through differing selection regimes

scientific article published on 24 July 2024

Quantification of algal endosymbionts (Symbiodinium) in coral tissue using real-time PCR.

scientific article published on January 2009

Quantitative high resolution melting: two methods to determine SNP allele frequencies from pooled samples

scientific article published on 13 June 2015

Rapid adaptive responses to climate change in corals

article

Rapid thermal adaptation in photosymbionts of reef-building corals

scientific article

Reef invertebrate viromics: diversity, host specificity and functional capacity.

scientific article published on 25 March 2018

Revisiting the connectivity puzzle of the common coral Pocillopora damicornis.

scientific article

Scientists' warning to humanity: microorganisms and climate change

scientific article published on 18 June 2019

Secondary structure of the rRNA ITS2 region reveals key evolutionary patterns in acroporid corals

scientific article published on 10 September 2008

Sex, Scavengers, and Chaperones: Transcriptome Secrets of Divergent Symbiodinium Thermal Tolerances

scientific article

Sex, Scavengers, and Chaperones: Transcriptome Secrets of Divergent Symbiodinium Thermal Tolerances

scientific article published in 2016

Shifting paradigms in restoration of the world's coral reefs.

scientific article

Simultaneous determination of coenzyme Q and plastoquinone redox states in the coral–Symbiodinium symbiosis during thermally induced bleaching

article published in 2014

Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria).

scientific article

Some rare Indo-Pacific coral species are probable hybrids

scientific article (publication date: 24 September 2008)

Spatial and temporal genetic structure of Symbiodinium populations within a common reef-building coral on the Great Barrier Reef

scientific article published on 4 June 2013

Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress

scientific article

Sperm dispersal distances estimated by parentage analysis in a brooding scleractinian coral

scientific article published on 28 January 2016

Symbiodiniaceae-bacteria interactions: rethinking metabolite exchange in reef-building corals as multi-partner metabolic networks

scientific article published on 13 January 2020

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

article published in 2018

Symbiodinium genotypic and environmental controls on lipids in reef building corals

scientific article (publication date: 2011)

Symbiodiniumgenomes reveal adaptive evolution of functions related to symbiosis

Sympatric populations of the highly cross-fertile coral species Acropora hyacinthus and Acropora cytherea are genetically distinct

scientific article (publication date: 22 June 2002)

Temperature‐mediated acquisition of rare heterologous symbionts promotes survival of coral larvae under ocean warming

scientific article published on 27 December 2021

The contribution of microbial biotechnology to mitigating coral reef degradation.

scientific article published on 11 July 2017

The coral Acropora loripes genome reveals an alternative pathway for cysteine biosynthesis in animals

scientific article published on 23 September 2022

The coral immune response facilitates protection against microbes during tissue regeneration

scientific article published on 19 June 2015

The highly cross-fertile coral species, Acropora hyacinthus and Acropora cytherea, constitute statistically distinguishable lineages

scientific article published on 01 August 2002

The mitochondrial genome of Acropora tenuis (Cnidaria; Scleractinia) contains a large group I intron and a candidate control region

scientific article published on 01 July 2002

The role of deep reefs in shallow reef recovery: an assessment of vertical connectivity in a brooding coral from west and east Australia

scientific article published on 16 March 2011

The role of zooxanthellae in the thermal tolerance of corals: a 'nugget of hope' for coral reefs in an era of climate change

scientific article

The roles and interactions of symbiont, host and environment in defining coral fitness

scientific article

The roles of age, parentage and environment on bacterial and algal endosymbiont communities in Acropora corals

scientific article published on 10 August 2019

The use of experimentally evolved coral photosymbionts for reef restoration

scientific article published in June 2024

Transcriptomic variation in a coral reveals pathways of clonal organisation.

scientific article

Unexpected cryptic species diversity in the widespread coral Seriatopora hystrix masks spatial-genetic patterns of connectivity.

scientific article published on June 2015

Unexpected patterns of genetic structuring among locations but not colour morphs in Acropora nasuta (Cnidaria; Scleractinia).

scientific article published in January 2004

Unique photosynthetic strategies employed by closely related Breviolum minutum strains under rapid short-term cumulative heat stress

scientific article published on 18 April 2024

Whole-genome duplication in an algal symbiont bolsters coral heat tolerance

scientific article published on 19 July 2024

List of works by Madeleine J. H. van Oppen

A PCR-Based Assay Targeting the Major Capsid Protein Gene of a Dinorna-Like ssRNA Virus That Infects Coral Photosymbionts

A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization

A multilocus, temperature stress-related gene expression profile assay in Acropora millepora, a dominant reef-building coral

A population genetic assessment of coral recovery on highly disturbed reefs of the Keppel Island archipelago in the southern Great Barrier Reef

A rapid genetic assay for the identification of the most common Pocillopora damicornis genetic lineages on the Great Barrier Reef

Adaptation to reef habitats through selection on the coral animal and its associated microbiome

Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats

Antibiotics reduce bacterial load in <i>Exaiptasia diaphana</i>, but biofilms hinder its development as a gnotobiotic coral model

Antimicrobial and stress responses to increased temperature and bacterial pathogen challenge in the holobiont of a reef-building coral

Apparent involvement of a beta1 type integrin in coral fertilization

Asymmetric dispersal is a critical element of concordance between biophysical dispersal models and spatial genetic structure in Great Barrier Reef corals

Asymmetric dispersal is a critical element of concordance between biophysical dispersal models and spatial genetic structure in Great Barrier Reef corals

Building coral reef resilience through assisted evolution.

CRISPR-Cas Defense System and Potential Prophages in Cyanobacteria Associated with the Coral Black Band Disease

Chimerism in wild adult populations of the broadcast spawning coral Acropora millepora on the Great Barrier Reef

Chromera velia is endosymbiotic in larvae of the reef corals Acropora digitifera and A. tenuis

Colonization and metabolite profiles of homologous, heterologous and experimentally evolved algal symbionts in the sea anemone <i>Exaiptasia diaphana</i>

Comparative immune responses of corals to stressors associated with offshore reef-based tourist platforms

Congruent patterns of connectivity can inform management for broadcast spawning corals on the Great Barrier Reef

Conservation genetics and the resilience of reef-building corals

Contrasting patterns of genetic structure in two species of the coral trout Plectropomus (Serranidae) from east and west Australia: introgressive hybridisation or ancestral polymorphisms.

Coral adaptation to climate change: Meta‐analysis reveals high heritability across multiple traits

Coral microbiome dynamics, functions and design in a changing world

Coral-associated viral communities show high levels of diversity and host auxiliary functions

Coral-the world's most diverse symbiotic ecosystem

Correction: Some Rare Indo-Pacific Coral Species Are Probable Hybrids

Correction: The Roles and Interactions of Symbiont, Host and Environment in Defining Coral Fitness.

Development of a free radical scavenging bacterial consortium to mitigate oxidative stress in cnidarians

Diverse associations among coral host haplotypes and algal endosymbionts may drive adaptation at geographically peripheral and ecologically marginal locations

Diversity and stability of coral endolithic microbial communities at a naturally high pCO2 reef

Ecologically relevant dispersal of corals on isolated reefs: implications for managing resilience

Eight microsatellite loci for the Irukandji syndrome-causing carybdeid jellyfish, Carukia barnesi (Cubozoa, Cnidaria).

Engineering Strategies to Decode and Enhance the Genomes of Coral Symbionts

Environmental factors controlling the distribution of symbiodinium harboured by the coral Acropora millepora on the Great Barrier Reef

Estimating the potential for adaptation of corals to climate warming

Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts

Evidence for de novo acquisition of microalgal symbionts by bleached adult corals

Expanding the Symbiodinium (Dinophyceae, Suessiales) Toolkit Through Protoplast Technology.

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

Expression of putative immune response genes during early ontogeny in the coral Acropora millepora

Factors affecting the evolution of bleaching resistance in corals

First frozen repository for the Great Barrier Reef coral created.

Flexibility in algal endosymbioses shapes growth in reef corals

From cholera to corals: Viruses as drivers of virulence in a major coral bacterial pathogen

Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts

Generating viral metagenomes from the coral holobiont

Genetic assignment of recruits reveals short- and long-distance larval dispersal in Pocillopora damicornis on the Great Barrier Reef

Genetic divergence across habitats in the widespread coral Seriatopora hystrix and its associated Symbiodinium

Genetic diversity and connectivity in a brooding reef coral at the limit of its distribution

Genetic markers for antioxidant capacity in a reef-building coral

Genetic traces of recent long-distance dispersal in a predominantly self-recruiting coral

Genetic, morphological and growth characterisation of a new Roseofilum strain (Oscillatoriales, Cyanobacteria) associated with coral black band disease.

Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts

Genotype - environment correlations in corals from the Great Barrier Reef

Geographic and habitat partitioning of genetically distinct zooxanthellae (Symbiodinium) in Acropora corals on the Great Barrier Reef.

Heat-evolved microalgal symbionts increase coral bleaching tolerance

Heat‐evolved algal symbionts enhance bleaching tolerance of adult corals without trade‐off against growth

High potential for formation and persistence of chimeras following aggregated larval settlement in the broadcast spawning coral, Acropora millepora

Highly infectious symbiont dominates initial uptake in coral juveniles.

Highly structured prokaryote communities exist within the skeleton of coral colonies

Historical and contemporary factors shape the population genetic structure of the broadcast spawning coral, Acropora millepora, on the Great Barrier Reef.

Historical thermal regimes define limits to coral acclimatization

HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts

Horizon scan of rapidly advancing coral restoration approaches for 21st century reef management

Host Coenzyme Q Redox State Is an Early Biomarker of Thermal Stress in the Coral Acropora millepora

Impact of light and temperature on the uptake of algal symbionts by coral juveniles

Intra-genomic variation in symbiotic dinoflagellates: recent divergence or recombination between lineages?

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome.

Maternal effects in gene expression of interspecific coral hybrids

Metagenomic characterisation of viral communities in corals: Mining biological signal from methodological noise

Metagenomic characterization of viral communities in corals: mining biological signal from methodological noise.

Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana

Microsatellite allele sizes alone are insufficient to delineate species boundaries in Symbiodinium.

Molecular delineation of species in the coral holobiont

New interventions are needed to save coral reefs

Niche specialization of reef-building corals in the mesophotic zone: metabolic trade-offs between divergent Symbiodinium types.

Novel T4 bacteriophages associated with black band disease in corals

Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny.