List of works - James A.H. Murray

A family of cyclin D homologs from plants differentially controlled by growth regulators and containing the conserved retinoblastoma protein interaction motif.

scientific article published on January 1995

A greenprint for growth: signalling the pattern of proliferation.

scientific article

A model for Arabidopsis class-1 KNOX gene function. ⬇️

scientific article published in April 2008

A novel and highly divergent Arabidopsis cyclin isolated by complementation in budding yeast.

scientific article published in May 2001

AINTEGUMENTA and the D-type cyclin CYCD3;1 independently contribute to petal size control in Arabidopsis: evidence for organ size compensation being an emergent rather than a determined property.

scientific article published on 6 May 2015

AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins

scientific article

Activation of CYCD7;1 in the central cell and early endosperm overcomes cell-cycle arrest in the Arabidopsis female gametophyte, and promotes early endosperm and embryo development

scientific article published on 11 August 2015

Arabidopsis CYCD3 D-type cyclins link cell proliferation and endocycles and are rate-limiting for cytokinin responses.

scientific article

Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.

scientific article

Arabidopsis transcript profiling on Affymetrix GeneChip arrays

article

Bending the rules: the 2-mu plasmid of yeast.

scientific article

Cell cycle regulated D3-type cyclins form active complexes with plant-specific B-type cyclin-dependent kinase in vitro

scientific article published on 01 May 2006

Cell-size dependent progression of the cell cycle creates homeostasis and flexibility of plant cell size

scientific article

Comprehensive gene expression atlas for the Arabidopsis MAP kinase signalling pathways.

scientific article published on January 2008

Control of plant growth and development through manipulation of cell-cycle genes.

scientific article

Convergent synthesis and optical properties of near-infrared emitting bioluminescent infra-luciferins

scientific article

Coordination of meristem and boundary functions by transcription factors in the SHOOT MERISTEMLESS regulatory network.

scientific article published on 12 April 2018

Cyclin D control of growth rate in plants.

scientific article

D-type cyclins control cell division and developmental rate during Arabidopsis seed development.

scientific article

DEFECTIVE KERNEL 1 promotes and maintains plant epidermal differentiation

scientific article published on 7 May 2015

Degradation of the cyclin-dependent kinase inhibitor KRP1 is regulated by two different ubiquitin E3 ligases

scientific article published on 14 November 2007

Discovery of the Pseudomonas Polyyne Protegencin by a Phylogeny-Guided Study of Polyyne Biosynthetic Gene Cluster Diversity

scientific article published on 03 August 2021

Dissecting regulatory pathways of G1/S control in Arabidopsis: common and distinct targets of CYCD3;1, E2Fa and E2Fc.

scientific article

Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis.

scientific article

Ectopic expression of Arabidopsis CYCD2 and CYCD3 in tobacco has distinct effects on the structural organization of the shoot apical meristem.

scientific article

Enhanced transformation of tnt by tobacco plants expressing a bacterial nitroreductase.

scientific article

Full Dynamic Range Quantification using Loop-mediated Amplification (LAMP) by Combining Analysis of Amplification Timing and Variance between Replicates at Low Copy Number

scientific article published on 22 January 2020

GMO detection using a bioluminescent real time reporter (BART) of loop mediated isothermal amplification (LAMP) suitable for field use

scientific article

Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis

scientific article published on 13 September 2017

Genome-wide gene expression in an Arabidopsis cell suspension.

scientific article published in November 2003

Genomic organization and evolutionary conservation of plant D-type cyclins

scientific article (publication date: December 2007)

Glutathione transport: a new role for PfCRT in chloroquine resistance

scientific article (publication date: September 2013)

Isolation of intact DNA and RNA from plant tissues

scientific article published on 01 May 1994

Mosaic analysis of GL2 gene expression and cell layer autonomy during the specification of Arabidopsis leaf trichomes.

scientific article published in October 2000

Multiple Genes Encoding the Conserved CCAAT-Box Transcription Factor Complex Are Expressed in Arabidopsis ⬇️

scientific article published on July 1, 1998

Mutagenesis of solvent-exposed amino acids in Photinus pyralis luciferase improves thermostability and pH-tolerance.

scientific article

Novel bioluminescent quantitative detection of nucleic acid amplification in real-time

scientific article

Parameters affecting lithium acetate-mediated transformation of Saccharomyces cerevisiae and development of a rapid and simplified procedure

scientific article published on 01 November 1993

Phytodetoxification of TNT by transgenic plants expressing a bacterial nitroreductase.

scientific article

Plant D-type cyclins and the control of G1 progression.

scientific article

Plant Development Meets Cell Proliferation in Madrid ⬇️

scientific article published on January 1, 2002

Plant homologs of the Plasmodium falciparum chloroquine-resistance transporter, PfCRT, are required for glutathione homeostasis and stress responses

scientific article

Re-induction of the cell cycle in the Arabidopsis post-embryonic root meristem is ABA-insensitive, GA-dependent and repressed by KRP6.

scientific article

Reduced False Positives and Improved Reporting of Loop-Mediated Isothermal Amplification using Quenched Fluorescent Primers

scientific article published on 14 May 2019

Seed size plasticity in response to embryonic lethality conferred by ectopic CYCD activation is dependent on plant architecture.

scientific article published on 10 June 2016

Site-specific recombinases: tools for genome engineering.

scientific article published on December 1993

Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.

scientific article

Standards for plant synthetic biology: a common syntax for exchange of DNA parts.

scientific article

Sugar control of the plant cell cycle: differential regulation of Arabidopsis D-type cyclin gene expression.

scientific article

Systems Analysis of Shoot Apical Meristem Growth and Development: Integrating Hormonal and Mechanical Signaling ⬇️

scientific article published on October 30, 2012

The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth

scientific article

The Arabidopsis CDK inhibitor ICK3/KRP5 is rate limiting for primary root growth and promotes growth through cell elongation and endoreduplication ⬇️

scientific article published on February 1, 2013

The Arabidopsis D-type cyclin CYCD2;1 and the inhibitor ICK2/KRP2 modulate auxin-induced lateral root formation.

scientific article published on 25 February 2011

The Arabidopsis homeobox gene SHOOT MERISTEMLESS has cellular and meristem-organisational roles with differential requirements for cytokinin and CYCD3 activity.

scientific article

The AtRbx1 protein is part of plant SCF complexes, and its down-regulation causes severe growth and developmental defects.

scientific article published on 14 October 2002

The D-type cyclin CYCD3;1 is limiting for the G1-to-S-phase transition in Arabidopsis.

scientific article published on 3 March 2006

The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region

scientific article

The KNOX gene SHOOT MERISTEMLESS is required for the development of reproductive meristematic tissues in Arabidopsis.

scientific article

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

scientific article published in December 2017

The developmental context of cell-cycle control in plants.

scientific article

The ethanol switch: a tool for tissue-specific gene induction during plant development.

scientific article published in December 2003

The evolving concept of the meristem.

scientific article

The maize retinoblastoma protein homologue ZmRb-1 is regulated during leaf development and displays conserved interactions with G1/S regulators and plant cyclin D (CycD) proteins.

scientific article published in May 1998

The plant cell cycle

scientific article published on 01 January 2003

The plant cell cycle in context

scientific article published in June 2014

Transcriptional activation of tobacco E2F is repressed by co-transfection with the retinoblastoma-related protein: cyclin D expression overcomes this repressor activity

scientific article published on 01 January 2005

WOX5 suppresses CYCLIN D activity to establish quiescence at the center of the root stem cell niche.

scientific article

ΔFlucs: Brighter Photinus pyralis firefly luciferases identified by surveying consecutive single amino acid deletion mutations in a thermostable variant.

scientific article published on 16 September 2017

List of works by James A.H. Murray

A family of cyclin D homologs from plants differentially controlled by growth regulators and containing the conserved retinoblastoma protein interaction motif.

A greenprint for growth: signalling the pattern of proliferation.

A model for Arabidopsis class-1 KNOX gene function. ⬇️

A novel and highly divergent Arabidopsis cyclin isolated by complementation in budding yeast.

AINTEGUMENTA and the D-type cyclin CYCD3;1 independently contribute to petal size control in Arabidopsis: evidence for organ size compensation being an emergent rather than a determined property.

AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins

Activation of CYCD7;1 in the central cell and early endosperm overcomes cell-cycle arrest in the Arabidopsis female gametophyte, and promotes early endosperm and embryo development

Arabidopsis CYCD3 D-type cyclins link cell proliferation and endocycles and are rate-limiting for cytokinin responses.

Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.

Arabidopsis transcript profiling on Affymetrix GeneChip arrays

Bending the rules: the 2-mu plasmid of yeast.

Cell cycle regulated D3-type cyclins form active complexes with plant-specific B-type cyclin-dependent kinase in vitro

Cell-size dependent progression of the cell cycle creates homeostasis and flexibility of plant cell size

Comprehensive gene expression atlas for the Arabidopsis MAP kinase signalling pathways.

Control of plant growth and development through manipulation of cell-cycle genes.

Convergent synthesis and optical properties of near-infrared emitting bioluminescent infra-luciferins

Coordination of meristem and boundary functions by transcription factors in the SHOOT MERISTEMLESS regulatory network.

Cyclin D control of growth rate in plants.

D-type cyclins control cell division and developmental rate during Arabidopsis seed development.

DEFECTIVE KERNEL 1 promotes and maintains plant epidermal differentiation

Degradation of the cyclin-dependent kinase inhibitor KRP1 is regulated by two different ubiquitin E3 ligases

Discovery of the Pseudomonas Polyyne Protegencin by a Phylogeny-Guided Study of Polyyne Biosynthetic Gene Cluster Diversity

Dissecting regulatory pathways of G1/S control in Arabidopsis: common and distinct targets of CYCD3;1, E2Fa and E2Fc.

Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis.

Ectopic expression of Arabidopsis CYCD2 and CYCD3 in tobacco has distinct effects on the structural organization of the shoot apical meristem.

Enhanced transformation of tnt by tobacco plants expressing a bacterial nitroreductase.

Full Dynamic Range Quantification using Loop-mediated Amplification (LAMP) by Combining Analysis of Amplification Timing and Variance between Replicates at Low Copy Number

GMO detection using a bioluminescent real time reporter (BART) of loop mediated isothermal amplification (LAMP) suitable for field use

Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis

Genome-wide gene expression in an Arabidopsis cell suspension.

Genomic organization and evolutionary conservation of plant D-type cyclins

Glutathione transport: a new role for PfCRT in chloroquine resistance

Isolation of intact DNA and RNA from plant tissues

Mosaic analysis of GL2 gene expression and cell layer autonomy during the specification of Arabidopsis leaf trichomes.

Multiple Genes Encoding the Conserved CCAAT-Box Transcription Factor Complex Are Expressed in Arabidopsis ⬇️

Mutagenesis of solvent-exposed amino acids in Photinus pyralis luciferase improves thermostability and pH-tolerance.

Novel bioluminescent quantitative detection of nucleic acid amplification in real-time

Parameters affecting lithium acetate-mediated transformation of Saccharomyces cerevisiae and development of a rapid and simplified procedure

Phytodetoxification of TNT by transgenic plants expressing a bacterial nitroreductase.

Plant D-type cyclins and the control of G1 progression.

Plant Development Meets Cell Proliferation in Madrid ⬇️

Plant homologs of the Plasmodium falciparum chloroquine-resistance transporter, PfCRT, are required for glutathione homeostasis and stress responses

Re-induction of the cell cycle in the Arabidopsis post-embryonic root meristem is ABA-insensitive, GA-dependent and repressed by KRP6.

Reduced False Positives and Improved Reporting of Loop-Mediated Isothermal Amplification using Quenched Fluorescent Primers

Seed size plasticity in response to embryonic lethality conferred by ectopic CYCD activation is dependent on plant architecture.

Site-specific recombinases: tools for genome engineering.

Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.

Standards for plant synthetic biology: a common syntax for exchange of DNA parts.

Sugar control of the plant cell cycle: differential regulation of Arabidopsis D-type cyclin gene expression.

Systems Analysis of Shoot Apical Meristem Growth and Development: Integrating Hormonal and Mechanical Signaling ⬇️

The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth

The Arabidopsis CDK inhibitor ICK3/KRP5 is rate limiting for primary root growth and promotes growth through cell elongation and endoreduplication ⬇️

The Arabidopsis D-type cyclin CYCD2;1 and the inhibitor ICK2/KRP2 modulate auxin-induced lateral root formation.

The Arabidopsis homeobox gene SHOOT MERISTEMLESS has cellular and meristem-organisational roles with differential requirements for cytokinin and CYCD3 activity.

The AtRbx1 protein is part of plant SCF complexes, and its down-regulation causes severe growth and developmental defects.

The D-type cyclin CYCD3;1 is limiting for the G1-to-S-phase transition in Arabidopsis.

The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region

The KNOX gene SHOOT MERISTEMLESS is required for the development of reproductive meristematic tissues in Arabidopsis.

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

The developmental context of cell-cycle control in plants.

The ethanol switch: a tool for tissue-specific gene induction during plant development.

The evolving concept of the meristem.

The maize retinoblastoma protein homologue ZmRb-1 is regulated during leaf development and displays conserved interactions with G1/S regulators and plant cyclin D (CycD) proteins.

The plant cell cycle

The plant cell cycle in context

Transcriptional activation of tobacco E2F is repressed by co-transfection with the retinoblastoma-related protein: cyclin D expression overcomes this repressor activity

WOX5 suppresses CYCLIN D activity to establish quiescence at the center of the root stem cell niche.

ΔFlucs: Brighter Photinus pyralis firefly luciferases identified by surveying consecutive single amino acid deletion mutations in a thermostable variant.