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List of works by Janne Ihalainen

2D-IR study of a photoswitchable isotope-labeled alpha-helix.

scientific article published in March 2010

Aggregates of the chlorophyll-binding protein IsiA (CP43') dissipate energy in cyanobacteria

scientific article

Alpha-Helix folding in the presence of structural constraints.

scholarly article

Beyond APAR and NPQ: Factors Coupling and Decoupling SIF and GPP Across Scales

scientific article published on 11 July 2021

Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells

Bioactive glass ions induce efficient osteogenic differentiation of human adipose stem cells encapsulated in gellan gum and collagen type I hydrogels

scientific article published on 13 February 2019

Bridged Epipolythiodiketopiperazines from Penicillium raciborskii, an Endophytic Fungus of Rhododendron tomentosum Harmaja.

scientific article

Bulky side chains and non-native salt bridges slow down the folding of a cross-linked helical peptide: a combined molecular dynamics and time-resolved infrared spectroscopy study

scientific article published in April 2009

Characterization of low-energy chlorophylls in the PSI-LHCI supercomplex from Chlamydomonas reinhardtii. A site-selective fluorescence study

scientific article published in November 2005

Chlorophyll a fluorescence illuminates a path connecting plant molecular biology to Earth-system science

scientific article

Chromophore-Protein Interplay during the Phytochrome Photocycle Revealed by Step-Scan FTIR Spectroscopy

scientific article published on 18 September 2018

Comparative analysis of two paradigm bacteriophytochromes reveals opposite functionalities in two-component signaling

scientific article

Connection between absorption properties and conformational changes in Deinococcus radiodurans phytochrome

scientific article published on 7 November 2014

Coordination of the biliverdin D-ring in bacteriophytochromes

scientific article published on 01 July 2018

Design, synthesis, and biological evaluation of nonsteroidal cycloalkane[d]isoxazole-containing androgen receptor modulators.

scientific article

Energy Transfer in LH2 of Rhodospirillum Molischianum, Studied by Subpicosecond Spectroscopy and Configuration Interaction Exciton Calculations

scientific article

Excitation Energy Transfer in Dimeric Light Harvesting Complex I: A Combined Streak-Camera/Fluorescence Upconversion Study

Excitation decay pathways of Lhca proteins: a time-resolved fluorescence study

scientific article published in November 2005

Excitation energy transfer in the LHC-II trimer: a model based on the new 2.72 A structure

scientific article

Excitation energy trapping in photosystem I complexes depleted in Lhca1 and Lhca4.

scientific article published in August 2005

Fast Photochemistry of Prototypical Phytochromes-A Species vs. Subunit Specific Comparison

scientific article published on 23 December 2015

Fluorescence properties of the chromophore-binding domain of bacteriophytochrome from Deinococcus radiodurans.

scientific article published on 3 April 2013

Fluorescence quenching of IsiA in early stage of iron deficiency and at cryogenic temperatures

scientific article published on 14 October 2007

Folding and unfolding of a photoswitchable peptide from picoseconds to microseconds.

scientific article

Functional rearrangement of the light-harvesting antenna upon state transitions in a green alga

scientific article published on January 2015

Illuminating a Phytochrome Paradigm – a Light-Activated Phosphatase in Two-Component Signaling Uncovered

scientific article

Isomerism of [64Cu-NOTA-Bn]-labeled radiotracers: separation of two complex isomers and determination of their interconversion energy barrier using ion pair chromatography.

scientific article published on 13 April 2011

Kinetics of excitation trapping in intact Photosystem I of Chlamydomonas reinhardtii and Arabidopsis thaliana

scientific article published in February 2005

Light-induced Changes in the Dimerization Interface of Bacteriophytochromes

scientific article published on 13 May 2015

Light-induced structural changes in a monomeric bacteriophytochrome

scientific article published on 29 August 2016

Modulation of Structural Heterogeneity Controls Phytochrome Photoswitching

scientific article published on 26 November 2019

More accuracy to the EROD measurements--the resorufin fluorescence differs between species and individuals

scientific article published on 17 March 2012

On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome

scientific article published in Journal of Biological Chemistry

Origin of the 701-nm fluorescence emission of the Lhca2 subunit of higher plant photosystem I.

scientific article published on 24 August 2004

Origins of fluorescence in evolved bacteriophytochromes

scientific article

Photoactivation of Drosophila melanogaster cryptochrome through sequential conformational transitions

scientific article published on 17 July 2019

Photocycle of the flavin-binding photoreceptor AppA, a bacterial transcriptional antirepressor of photosynthesis genes

scientific article

Pigment organization and energy transfer dynamics in isolated photosystem I (PSI) complexes from Arabidopsis thaliana depleted of the PSI-G, PSI-K, PSI-L, or PSI-N subunit

scientific article

Raman spectroscopic signatures of echovirus 1 uncoating.

scientific article

Red Spectral Forms of Chlorophylls in Green Plant PSI− A Site-Selective and High-Pressure Spectroscopy Study+

article

Retene, pyrene and phenanthrene cause distinct molecular-level changes in the cardiac tissue of rainbow trout (Oncorhynchus mykiss) larvae, part 1 - Transcriptomics

scientific article published on 22 July 2020

Sequential conformational transitions and α-helical supercoiling regulate a sensor histidine kinase

scientific article published on 18 August 2017

Signal amplification and transduction in phytochrome photosensors

scientific article

Site-by-site tracking of signal transduction in an azidophenylalanine-labeled bacteriophytochrome with step-scan FTIR spectroscopy

scientific article

Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome

scientific article published on 29 August 2018

Structural photoactivation of a full-length bacterial phytochrome

scientific article published on 12 August 2016

Structure of the Higher Plant Light Harvesting Complex I: In Vivo Characterization and Structural Interdependence of the Lhca Proteins†

article

Subcellular localization of bacteriophage PRD1 proteins in Escherichia coli.

scientific article

Superchiral Pd3 L6 Coordination Complex and Its Reversible Structural Conversion into Pd3 L3 Cl6 Metallocycles.

scientific article

Supramolecular organization and dual function of the IsiA chlorophyll-binding protein in cyanobacteria

scientific article published in August 2004

Synthesis, characterization and applicability of three isotope labeled azobenzene photoswitches

scientific article

The Minor Capsid Protein VP11 of Thermophilic Bacteriophage P23-77 Facilitates Virus Assembly by Using Lipid-Protein Interactions

scientific article published on 13 May 2015

The Structural Diversity of Benzofuran Resorcinarene Leads to Enhanced Fluorescence

scientific article published on 29 April 2014

The hairpin extension controls solvent access to the chromophore binding pocket in a bacterial phytochrome: a UV–vis absorption spectroscopy study

scientific article

The low-energy forms of photosystem I light-harvesting complexes: spectroscopic properties and pigment-pigment interaction characteristics

scientific article published on June 2007

The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser

scientific article published on 31 March 2020

The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography

scientific article

The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature

scientific article

Tips and turns of bacteriophytochrome photoactivation

scientific article published on 27 October 2020

Tracking Changes in Protonation and Conformation during Photoactivation of a Phytochrome Protein

scientific article

Transient IR spectroscopy identifies key interactions and unravels new intermediates in the photocycle of a bacterial phytochrome

scientific article published on 09 March 2020

UV-Vis Spectroscopy Reveals a Correlation Between Y263 and BV Protonation States in Bacteriophytochromes

scientific article published on 29 March 2019

Ubiquitous Structural Signaling in Bacterial Phytochromes.

scientific article published on 14 August 2015

Unraveling the interaction between doxorubicin and DNA origami nanostructures for customizable chemotherapeutic drug release

scientific article

Unraveling the interaction between doxorubicin and DNA origami nanostructures for customizable chemotherapeutic drug release

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