List of works - Ewa Deelman

A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case Study

ACCESS Pegasus: Bringing Workflows to the ACCESS Masses

scientific article published on 10 September 2023

Adaptive Workflow Processing and Execution in Pegasus

Adaptive workflow processing and execution in Pegasus

An Evaluation of the Cost and Performance of Scientific Workflows on Amazon EC2

Association of cancer susceptibility variants with risk of multiple primary cancers: The population architecture using genomics and epidemiology study

scientific article

Association of functional polymorphism rs2231142 (Q141K) in the ABCG2 gene with serum uric acid and gout in 4 US populations: the PAGE Study

scientific article

Association of genetic variants and incident coronary heart disease in multiethnic cohorts: the PAGE study

scientific article published on 31 October 2011

Communication and data-intensive science in the beginning of the 21st century

scientific article

Connecting Scientific Data to Scientific Experiments with Provenance

CyberShake: A Physics-Based Seismic Hazard Model for Southern California

Data Sharing Options for Scientific Workflows on Amazon EC2

Designing a road map for geoscience workflows

Elephants Sharing the Highway: Studying TCP Fairness in Large Transfers over High Throughput Links

scientific article published on 10 November 2023

Enabling Data and Compute Intensive Workflows in Bioinformatics

Enabling large-scale scientific workflows on petascale resources using MPI master/worker

End-to-end Integration of Scientific Workflows on Distributed Cyberinfrastructures: Challenges and Lessons Learned with an Earth Science Application

scientific article published on 04 April 2024

Enhancing reproducibility for computational methods

scientific article published in December 2016

Evidence of heterogeneity by race/ethnicity in genetic determinants of QT interval

scientific article

Examining the Challenges of Scientific Workflows

Experiences Using GlideinWMS and the Corral Frontend across Cyberinfrastructures

Generating Complex Astronomy Workflows

scholarly article

Genetic Diversity Turns a New PAGE in Our Understanding of Complex Traits

HNF1B and endometrial cancer risk: results from the PAGE study

scientific article

HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH

scientific article (publication date: August 2009)

Lack of associations of ten candidate coronary heart disease risk genetic variants and subclinical atherosclerosis in four US populations: the Population Architecture using Genomics and Epidemiology (PAGE) study

scientific article published on 13 March 2013

Lyme Disease: Self-regulation and Pathogen Invasion

article

Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance Tracking: The CyberShake Example

Metadata and Provenance Management

Metrics for heterogeneous scientific workflows: A case study of an earthquake science application

scholarly article by Scott Callaghan et al published 29 June 2011 in International Journal of High Performance Computing Applications

Montage: a grid portal and software toolkit for science-grade astronomical image mosaicking

Montage: a grid-enabled engine for delivering custom science-grade mosaics on demand

Multiancestral analysis of inflammation-related genetic variants and C-reactive protein in the population architecture using genomics and epidemiology study

scientific article

New genetic loci link adipose and insulin biology to body fat distribution

scientific article

New tools and methods for direct programmatic access to the dbSNP relational database

scientific article

Optimizing Workflow Data Footprint

Parameterized Specification, Configuration and Execution of Data-Intensive Scientific Workflows

scientific article

Pegasus, a workflow management system for science automation

Pegasus: A Framework for Mapping Complex Scientific Workflows onto Distributed Systems

Phenome-wide association study (PheWAS) for detection of pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network

scientific article

Pleiotropic associations of risk variants identified for other cancers with lung cancer risk: the PAGE and TRICL consortia

scientific article

Pleiotropy of cancer susceptibility variants on the risk of non-Hodgkin lymphoma: the PAGE consortium

scientific article

Provenance: The Bridge Between Experiments and Data

Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake

Reproducibility of execution environments in computational science using Semantics and Clouds

scholarly article by Idafen Santana-Perez et al published February 2017 in Future Generation Computer Systems

Reproducibility of neuroimaging analyses across operating systems

scientific article published on 24 April 2015

Reproducibility of the First Image of a Black Hole in the Galaxy M87 From the Event Horizon Telescope Collaboration

Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger

scientific article published on 12 February 2021

RseqFlow: workflows for RNA-Seq data analysis ⬇️

scientific article published on July 27, 2011

SCEC CyberShake Workflows—Automating Probabilistic Seismic Hazard Analysis Calculations

SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study

scientific article

Scaling up workflow-based applications

Scheduling Multilevel Deadline-Constrained Scientific Workflows on Clouds Based on Cost Optimization

article by Maciej Malawski et al published 2015 in Scientific Programming

Science applications of the Montage image mosaic engine

Scientific Process Automation and Workflow Management

Scientific workflow applications on Amazon EC2

Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling Environment

scholarly article by Philip J. Maechling et al published 1 September 2005 in ACM SIGMOD Record

Simulating Spatially Explicit Problems on High Performance Architectures

Special Issue: The First Provenance Challenge

article

Storage-aware Algorithms for Scheduling of Workflow Ensembles in Clouds

Ten years of software sustainability at the Infrared Processing and Analysis Center ⬇️

scientific article published on August 28, 2011

The Pegasus portal

The application of cloud computing to scientific workflows: a study of cost and performance

scientific article published on 10 December 2012

The application of cloud computing to the creation of image mosaics and management of their provenance

scholarly article published 16 July 2010

Wings: Intelligent Workflow-Based Design of Computational Experiments

article by Yolanda Gil et al published January 2011 in IEEE Intelligent Systems

List of works by Ewa Deelman

A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case Study

ACCESS Pegasus: Bringing Workflows to the ACCESS Masses

Adaptive Workflow Processing and Execution in Pegasus

Adaptive workflow processing and execution in Pegasus

An Evaluation of the Cost and Performance of Scientific Workflows on Amazon EC2

Association of cancer susceptibility variants with risk of multiple primary cancers: The population architecture using genomics and epidemiology study

Association of functional polymorphism rs2231142 (Q141K) in the ABCG2 gene with serum uric acid and gout in 4 US populations: the PAGE Study

Association of genetic variants and incident coronary heart disease in multiethnic cohorts: the PAGE study

Communication and data-intensive science in the beginning of the 21st century

Connecting Scientific Data to Scientific Experiments with Provenance

CyberShake: A Physics-Based Seismic Hazard Model for Southern California

Data Sharing Options for Scientific Workflows on Amazon EC2

Designing a road map for geoscience workflows

Elephants Sharing the Highway: Studying TCP Fairness in Large Transfers over High Throughput Links

Enabling Data and Compute Intensive Workflows in Bioinformatics

Enabling large-scale scientific workflows on petascale resources using MPI master/worker

End-to-end Integration of Scientific Workflows on Distributed Cyberinfrastructures: Challenges and Lessons Learned with an Earth Science Application

Enhancing reproducibility for computational methods

Evidence of heterogeneity by race/ethnicity in genetic determinants of QT interval

Examining the Challenges of Scientific Workflows

Experiences Using GlideinWMS and the Corral Frontend across Cyberinfrastructures

Generating Complex Astronomy Workflows

Genetic Diversity Turns a New PAGE in Our Understanding of Complex Traits

HNF1B and endometrial cancer risk: results from the PAGE study

HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH

Lack of associations of ten candidate coronary heart disease risk genetic variants and subclinical atherosclerosis in four US populations: the Population Architecture using Genomics and Epidemiology (PAGE) study

Lyme Disease: Self-regulation and Pathogen Invasion

Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance Tracking: The CyberShake Example

Metadata and Provenance Management

Metrics for heterogeneous scientific workflows: A case study of an earthquake science application

Montage: a grid portal and software toolkit for science-grade astronomical image mosaicking

Montage: a grid-enabled engine for delivering custom science-grade mosaics on demand

Multiancestral analysis of inflammation-related genetic variants and C-reactive protein in the population architecture using genomics and epidemiology study

New genetic loci link adipose and insulin biology to body fat distribution

New tools and methods for direct programmatic access to the dbSNP relational database

Optimizing Workflow Data Footprint

Parameterized Specification, Configuration and Execution of Data-Intensive Scientific Workflows

Pegasus, a workflow management system for science automation

Pegasus: A Framework for Mapping Complex Scientific Workflows onto Distributed Systems

Phenome-wide association study (PheWAS) for detection of pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network

Pleiotropic associations of risk variants identified for other cancers with lung cancer risk: the PAGE and TRICL consortia

Pleiotropy of cancer susceptibility variants on the risk of non-Hodgkin lymphoma: the PAGE consortium

Provenance: The Bridge Between Experiments and Data

Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake

Reproducibility of execution environments in computational science using Semantics and Clouds

Reproducibility of neuroimaging analyses across operating systems

Reproducibility of the First Image of a Black Hole in the Galaxy M87 From the Event Horizon Telescope Collaboration

Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger

RseqFlow: workflows for RNA-Seq data analysis ⬇️

SCEC CyberShake Workflows—Automating Probabilistic Seismic Hazard Analysis Calculations

SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study

Scaling up workflow-based applications

Scheduling Multilevel Deadline-Constrained Scientific Workflows on Clouds Based on Cost Optimization

Science applications of the Montage image mosaic engine

Scientific Process Automation and Workflow Management

Scientific workflow applications on Amazon EC2

Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling Environment

Simulating Spatially Explicit Problems on High Performance Architectures

Special Issue: The First Provenance Challenge

Storage-aware Algorithms for Scheduling of Workflow Ensembles in Clouds

Ten years of software sustainability at the Infrared Processing and Analysis Center ⬇️

The Pegasus portal

The application of cloud computing to scientific workflows: a study of cost and performance

The application of cloud computing to the creation of image mosaics and management of their provenance

Wings: Intelligent Workflow-Based Design of Computational Experiments

Workflow task clustering for best effort systems with Pegasus