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List of works by Joana P Gonçalves

AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences

scientific article published on January 1, 2012

Candidate gene prioritization by network analysis of differential expression using machine learning approaches.

scientific article

Interactogeneous: disease gene prioritization using heterogeneous networks and full topology scores

scientific article

LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification.

scientific article published on September 2014

Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency

scientific article published on 08 April 2019

PINTA: a web server for network-based gene prioritization from expression data

scientific article

POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data

scientific article

Predicting disease associations via biological network analysis.

scientific article

Regulatory Snapshots: integrative mining of regulatory modules from expression time series and regulatory networks

scientific article

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses

scientific article

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae ⬇️

scientific article published on 28 October 2013

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