List of works - Thomas D Schneider

70% efficiency of bistate molecular machines explained by information theory, high dimensional geometry and evolutionary convergence

scientific article

A brief review of molecular information theory.

scientific article published on September 2010

An Evolutionary/Biochemical Connection Between Promoter- and Primer-Dependent Polymerases Revealed by Selective Evolution of Ligands by Exponential Enrichment (SELEX).

scientific article published on 16 January 2018

An unusual feature associated with LEE1 P1 promoters in enteropathogenic Escherichia coli (EPEC) ⬇️

scientific article published on January 9, 2012

Anatomy of Escherichia coli sigma70 promoters.

scientific article published on 22 December 2006

Claude Shannon: biologist. The founder of information theory used biology to formulate the channel capacity.

scientific article

Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands.

scientific article

Correlation between binding rate constants and individual information of E. coli Fis binding sites

scientific article

Delila system tools.

scientific article published on January 1984

Density of σ70 promoter-like sites in the intergenic regions dictates the redistribution of RNA polymerase during osmotic stress in Escherichia coli

scientific article published on 01 May 2019

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

scientific article

Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique.

scientific article published in January 1989

Genome-Wide Transcriptional Regulation and Chromosome Structural Arrangement by GalR in E. coli.

scientific article

High information conservation implies that at least three proteins bind independently to F plasmid incD repeats

scientific article

Identification of a Cryptic Bacterial Promoter in Mouse (mdr1a) P-Glycoprotein cDNA.

scientific article published on 26 August 2015

Information analysis of Fis binding sites

scientific article published in December 1997

Information analysis of human splice site mutations ⬇️

scientific article published on January 1, 1998

Information analysis of sequences that bind the replication initiator RepA.

scientific article published on September 1993

Information content of binding sites on nucleotide sequences

scientific article (publication date: 5 April 1986)

Information content of individual genetic sequences.

scientific article published in December 1997

Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases.

scientific article

Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters

scientific article published on 01 November 1999

Measuring molecular information

scientific article published on 01 November 1999

Molecular flip-flops formed by overlapping Fis sites.

scientific article

Promoter variants in the MSMB gene associated with prostate cancer regulate MSMB/NCOA4 fusion transcripts

scientific article published on 04 June 2012

Redundant designations of BRCA1 intron 11 splicing mutation; c. 4216-2A>G; IVS11-2A>G; L78833, 37698, A>G

scientific article published on 01 September 2000

Restriction enzymes use a 24 dimensional coding space to recognize 6 base long DNA sequences

scientific article published on 31 October 2019

Sequence walkers: A graphical method to display how binding proteins interact with DNA or RNA sequences ⬇️

scientific article published on November 1, 1997

Small membrane proteins found by comparative genomics and ribosome binding site models.

scientific article published on December 2008

Two essential splice lariat branchpoint sequences in one intron in a xeroderma pigmentosum DNA repair gene: mutations result in reduced XPC mRNA levels that correlate with cancer risk.

scientific article

Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

scientific article (publication date: 1982)

Using information content and base frequencies to distinguish mutations from genetic polymorphisms in splice junction recognition sites.

scientific article published in January 1995

List of works by Thomas D Schneider

70% efficiency of bistate molecular machines explained by information theory, high dimensional geometry and evolutionary convergence

A brief review of molecular information theory.

An Evolutionary/Biochemical Connection Between Promoter- and Primer-Dependent Polymerases Revealed by Selective Evolution of Ligands by Exponential Enrichment (SELEX).

An unusual feature associated with LEE1 P1 promoters in enteropathogenic Escherichia coli (EPEC) ⬇️

Anatomy of Escherichia coli sigma70 promoters.

Claude Shannon: biologist. The founder of information theory used biology to formulate the channel capacity.

Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands.

Correlation between binding rate constants and individual information of E. coli Fis binding sites

Delila system tools.

Density of σ70 promoter-like sites in the intergenic regions dictates the redistribution of RNA polymerase during osmotic stress in Escherichia coli

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique.

Genome-Wide Transcriptional Regulation and Chromosome Structural Arrangement by GalR in E. coli.

High information conservation implies that at least three proteins bind independently to F plasmid incD repeats

Identification of a Cryptic Bacterial Promoter in Mouse (mdr1a) P-Glycoprotein cDNA.

Information analysis of Fis binding sites

Information analysis of human splice site mutations ⬇️

Information analysis of sequences that bind the replication initiator RepA.

Information content of binding sites on nucleotide sequences

Information content of individual genetic sequences.

Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases.

Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters

Measuring molecular information

Molecular flip-flops formed by overlapping Fis sites.

Promoter variants in the MSMB gene associated with prostate cancer regulate MSMB/NCOA4 fusion transcripts

Redundant designations of BRCA1 intron 11 splicing mutation; c. 4216-2A>G; IVS11-2A>G; L78833, 37698, A>G

Restriction enzymes use a 24 dimensional coding space to recognize 6 base long DNA sequences

Sequence walkers: A graphical method to display how binding proteins interact with DNA or RNA sequences ⬇️

Small membrane proteins found by comparative genomics and ribosome binding site models.

Two essential splice lariat branchpoint sequences in one intron in a xeroderma pigmentosum DNA repair gene: mutations result in reduced XPC mRNA levels that correlate with cancer risk.

Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

Using information content and base frequencies to distinguish mutations from genetic polymorphisms in splice junction recognition sites.