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List of works by Ryan K Dale

A compendium of RNA-binding motifs for decoding gene regulation.

scientific article

Argonaute2 and LaminB modulate gene expression by controlling chromatin topology

scientific article published on 12 March 2018

Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster

scientific article published in Scientific Reports

Bioconda

scientific article published on 01 July 2018

Bioconda: sustainable and comprehensive software distribution for the life sciences

scientific article published on 01 July 2018

CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus

scientific article

Cell type specificity of chromatin organization mediated by CTCF and cohesin.

scientific article

Correction: The zinc-finger protein CLAMP promotes chromatin insulator function in (doi:10.1242/jcs.226092)

scientific article published in 2019

Detection of precisely edited CRISPR/Cas9 alleles through co-introduced restriction-fragment length polymorphisms

scientific article published on 20 April 2021

Distinct Ldb1/NLI complexes orchestrate γ-globin repression and reactivation through ETO2 in human adult erythroid cells

scientific article published on 18 October 2011

Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila

scientific article published on 28 January 2013

Ldb1 regulates carbonic anhydrase 1 during erythroid differentiation

scientific article published on 18 May 2012

Ldb1-nucleated transcription complexes function as primary mediators of global erythroid gene activation

scientific article published on 22 April 2013

Mediation of Drosophila autosomal dosage effects and compensation by network interactions

scientific article

Messenger RNA is a functional component of a chromatin insulator complex

scientific article published on 06 August 2013

NMDAR-mediated transcriptional control of gene expression during the development of medial ganglionic eminence-derived interneurons

scientific article published on 12 June 2020

Practical Computational Reproducibility in the Life Sciences

scientific article published on 01 June 2018

Practical computational reproducibility in the life sciences

scientific article published on 10 October 2017

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

scientific article

RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function

scientific article

Role of LDB1 in the transition from chromatin looping to transcription activation.

scientific article

Sex- and tissue-specific functions of Drosophila doublesex transcription factor target genes

scientific article

Shep regulates Drosophila neuronal remodeling by controlling transcription of its chromatin targets.

scientific article published on 20 November 2017

The LDB1 Complex Co-opts CTCF for Erythroid Lineage-Specific Long-Range Enhancer Interactions

scientific article published on June 2017

The RNA-binding protein Rumpelstiltskin antagonizes gypsy chromatin insulator function in a tissue-specific manner

scientific article

The role of Niemann-Pick type C2 in zebrafish embryonic development

scientific article published in April 2021

The zinc-finger protein CLAMP promotes gypsy chromatin insulator function in Drosophila

scientific article published on 08 March 2019

Tissue-specific regulation of chromatin insulator function

scientific article

metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA.

scientific article

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