List of works - William Brad Barbazuk

A Comparative Analysis of Gene Expression Profiles during Skin Regeneration in Mus and Acomys.

scientific article published on 25 November 2015

A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize

scientific article

A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids

scientific article published on 13 September 2018

A conserved alternative splicing event in plants reveals an ancient exonization of 5S rRNA that regulates TFIIIA.

scientific article

A high-density gene map of loblolly pine (Pinus taeda L.) based on exome sequence capture genotyping

scientific article published on 10 January 2014

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

scientific article

Aberrant splicing in maize rough endosperm3 reveals a conserved role for U12 splicing in eukaryotic multicellular development

scientific article published on 27 February 2017

Adaptive expansion of the maize maternally expressed gene (Meg) family involves changes in expression patterns and protein secondary structures of its members

scientific article

Alternative splicing of anciently exonized 5S rRNA regulates plant transcription factor TFIIIA.

scientific article published on 10 February 2009

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella

scientific article published in December 2013

Biological features between miRNAs and their targets are unveiled from deep learning models

scientific article published on 10 December 2021

Caffeine exposure alters cardiac gene expression in embryonic cardiomyocytes.

scientific article

Cellular events during scar-free skin regeneration in the spiny mouse, Acomys

scientific article published on 25 November 2015

Changes in protein abundance during powdery mildew infection of leaf tissues of Cabernet Sauvignon grapevine (Vitis vinifera L.).

scientific article published on 01 May 2010

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

scientific article

Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome

scientific article

Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure

scientific article

Evolutionarily Conserved Alternative Splicing Across Monocots.

scientific article published on 24 August 2017

Extension of Lander-Waterman theory for sequencing filtered DNA libraries.

scientific article

Gene discovery and annotation using LCM-454 transcriptome sequencing.

scientific article published on 9 November 2006

Genome Sequences of Mycobacteriophages Findley, Hurricane, and TBond007.

scientific article published on 9 November 2017

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome-wide analyses of alternative splicing in plants: opportunities and challenges.

scientific article published on 30 July 2008

Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides.

scientific article published on 6 September 2016

Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants

scientific article

High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes

scientific article (publication date: 2 December 2010)

High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing

scientific article

Identification and analysis of alternative splicing events in Phaseolus vulgaris and Glycine max.

scientific article

MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes

scientific article

Novel and nodulation-regulated microRNAs in soybean roots.

scientific article

On the origins of species: does evolution repeat itself in polyploid populations of independent origin?

scientific article published on 17 August 2009

Population genomics of the eastern cottonwood (Populus deltoides).

scientific article

Potential use of low-copy nuclear genes in DNA barcoding: a comparison with plastid genes in two Hawaiian plant radiations. ⬇️

scientific article

RNA Binding Motif Protein 48 Is Required for U12 Splicing and Maize Endosperm Differentiation

scientific article published on 13 February 2019

Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin.

scientific article published on 19 January 2012

Reduced representation sequencing: a success in maize and a promise for other plant genomes

scientific article published on 01 August 2005

Repeat subtraction-mediated sequence capture from a complex genome.

scientific article

SNP Discovery by Transcriptome Pyrosequencing ⬇️

scientific article published on January 1, 2011

SNP Mining from Maize 454 EST Sequences ⬇️

scientific article published on 01 July 2007

SNP discovery via 454 transcriptome sequencing

scientific article

Silencing of soybean seed storage proteins results in a rebalanced protein composition preserving seed protein content without major collateral changes in the metabolome and transcriptome.

scientific article published on 10 March 2011

The B73 Maize Genome: Complexity, Diversity, and Dynamics

scientific article

The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly

scientific article published on 03 December 2019

The potential of genomics in plant systematics

scientific article (publication date: 22 October 2013)

The syntenic relationship of the zebrafish and human genomes.

scientific article published on September 2000

Trajectories of Homoeolog-Specific Expression in Allotetraploid <i>Tragopogon castellanus</i> Populations of Independent Origins

scientific article published on 23 June 2021

Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant

scientific article

Uneven chromosome contraction and expansion in the maize genome.

scientific article

Validation of reference transcripts in strawberry (Fragaria spp.).

scientific article published on 24 September 2013

Whole‐exome targeted sequencing of the uncharacterized pine genome ⬇️

scientific article published on May 7, 2013

miTAR: a hybrid deep learning-based approach for predicting miRNA targets

scientific article published on 27 February 2021

List of works by William Brad Barbazuk

A Comparative Analysis of Gene Expression Profiles during Skin Regeneration in Mus and Acomys.

A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize

A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids

A conserved alternative splicing event in plants reveals an ancient exonization of 5S rRNA that regulates TFIIIA.

A high-density gene map of loblolly pine (Pinus taeda L.) based on exome sequence capture genotyping

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

Aberrant splicing in maize rough endosperm3 reveals a conserved role for U12 splicing in eukaryotic multicellular development

Adaptive expansion of the maize maternally expressed gene (Meg) family involves changes in expression patterns and protein secondary structures of its members

Alternative splicing of anciently exonized 5S rRNA regulates plant transcription factor TFIIIA.

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella

Biological features between miRNAs and their targets are unveiled from deep learning models

Caffeine exposure alters cardiac gene expression in embryonic cardiomyocytes.

Cellular events during scar-free skin regeneration in the spiny mouse, Acomys

Changes in protein abundance during powdery mildew infection of leaf tissues of Cabernet Sauvignon grapevine (Vitis vinifera L.).

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome

Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure

Evolutionarily Conserved Alternative Splicing Across Monocots.

Extension of Lander-Waterman theory for sequencing filtered DNA libraries.

Gene discovery and annotation using LCM-454 transcriptome sequencing.

Genome Sequences of Mycobacteriophages Findley, Hurricane, and TBond007.

Genome sequencing and analysis of the model grass Brachypodium distachyon

Genome-wide analyses of alternative splicing in plants: opportunities and challenges.

Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides.

Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants

High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes

High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing

Identification and analysis of alternative splicing events in Phaseolus vulgaris and Glycine max.

MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes

Novel and nodulation-regulated microRNAs in soybean roots.

On the origins of species: does evolution repeat itself in polyploid populations of independent origin?

Population genomics of the eastern cottonwood (Populus deltoides).

Potential use of low-copy nuclear genes in DNA barcoding: a comparison with plastid genes in two Hawaiian plant radiations. ⬇️

RNA Binding Motif Protein 48 Is Required for U12 Splicing and Maize Endosperm Differentiation

Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin.

Reduced representation sequencing: a success in maize and a promise for other plant genomes

Repeat subtraction-mediated sequence capture from a complex genome.

SNP Discovery by Transcriptome Pyrosequencing ⬇️

SNP Mining from Maize 454 EST Sequences ⬇️

SNP discovery via 454 transcriptome sequencing

Silencing of soybean seed storage proteins results in a rebalanced protein composition preserving seed protein content without major collateral changes in the metabolome and transcriptome.

The B73 Maize Genome: Complexity, Diversity, and Dynamics

The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly

The potential of genomics in plant systematics

The syntenic relationship of the zebrafish and human genomes.

Trajectories of Homoeolog-Specific Expression in Allotetraploid <i>Tragopogon castellanus</i> Populations of Independent Origins

Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant

Uneven chromosome contraction and expansion in the maize genome.

Validation of reference transcripts in strawberry (Fragaria spp.).

Whole‐exome targeted sequencing of the uncharacterized pine genome ⬇️

miTAR: a hybrid deep learning-based approach for predicting miRNA targets