List of works - Steffen Waldherr

A Protocol for Generating and Exchanging (Genome-Scale) Metabolic Resource Allocation Models.

scientific article published on 6 September 2017

A maximum likelihood estimator for parameter distributions in heterogeneous cell populations

article by Jan Hasenauer et al published May 2010 in Procedia Computer Science

A robustness measure for the stationary behavior of qualitative gene regulation networks

article

An inverse problem of tomographic type in population dynamics

article

Analysis of heterogeneous cell populations: A density-based modeling and identification framework

article

Approximative classification of regions in parameter spaces of nonlinear ODEs yielding different qualitative behavior

Autonomous synchronization of chemically coupled synthetic oscillators.

scientific article published on 4 March 2011

Bifurcation search via feedback loop breaking in biochemical signaling pathways with time delay

Bridging time scales in cellular decision making with a stochastic bistable switch

scientific article

Cell differentiation modeled via a coupled two-switch regulatory network

scientific article published on December 2010

Death wins against life in a spatially extended model of the caspase-3/8 feedback loop

scientific article published on 21 January 2012

Design of biomolecular network modifications to achieve adaptation.

scientific article

Dynamic optimization of metabolic networks coupled with gene expression

scientific article

Efficient parametric analysis of the chemical master equation through model order reduction.

scientific article published on 2 July 2012

Ensemble Observability of Linear Systems

Estimation methods for heterogeneous cell population models in systems biology

scientific article published on 31 October 2018

Generic bifurcations in the dynamics of biochemical networks

article

Guaranteed steady state bounds for uncertain (bio-)chemical processes using infeasibility certificates

Identification of models of heterogeneous cell populations from population snapshot data

scientific article

Kinetic perturbations as robustness analysis tool for biochemical reaction networks

Modelling and Analysis of Cell Death Signalling

Multistability equivalence between gene regulatory networks of different dimensionality with application to a differentiation network

article

Network-level dynamics of diffusively coupled cells

article

Optimization of bioprocess productivity based on metabolic-genetic network models with bilevel dynamic programming.

scientific article

Pain modulators regulate the dynamics of PKA-RII phosphorylation in subgroups of sensory neurons

scientific article published on 4 November 2013

Parameter identification, experimental design and model falsification for biological network models using semidefinite programming

scientific article

Response to bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeability transition pores

scientific article published on 2 February 2007

Robust signal processing in living cells

scientific article

Robust stability and instability of biochemical networks with parametric uncertainty

Robustness and Information Transfer within IL-6-induced JAK/STAT Signalling

scientific article published on 18 January 2019

Rückkopplungen im Leben und Sterben einer Zelle: Ansätze zur systemtheoretischen Analyse (Feedback during Life and Death of a Cell: Approaches for Systems Theoretical Analysis)

Searching bifurcations in high-dimensional parameter space via a feedback loop breaking approach

Sensitivity analysis of programmed cell death and implications for crosstalk phenomena during Tumor Necrosis Factor stimulation

Steady state and (bi-) stability evaluation of simple protease signalling networks.

scientific article published on 14 January 2007

Steady-state robustness of qualitative gene regulation networks

article

List of works by Steffen Waldherr

A Protocol for Generating and Exchanging (Genome-Scale) Metabolic Resource Allocation Models.

A maximum likelihood estimator for parameter distributions in heterogeneous cell populations

A robustness measure for the stationary behavior of qualitative gene regulation networks

An inverse problem of tomographic type in population dynamics

Analysis of heterogeneous cell populations: A density-based modeling and identification framework

Approximative classification of regions in parameter spaces of nonlinear ODEs yielding different qualitative behavior

Autonomous synchronization of chemically coupled synthetic oscillators.

Bifurcation search via feedback loop breaking in biochemical signaling pathways with time delay

Bridging time scales in cellular decision making with a stochastic bistable switch

Cell differentiation modeled via a coupled two-switch regulatory network

Death wins against life in a spatially extended model of the caspase-3/8 feedback loop

Design of biomolecular network modifications to achieve adaptation.

Dynamic optimization of metabolic networks coupled with gene expression

Efficient parametric analysis of the chemical master equation through model order reduction.

Ensemble Observability of Linear Systems

Estimation methods for heterogeneous cell population models in systems biology

Generic bifurcations in the dynamics of biochemical networks

Guaranteed steady state bounds for uncertain (bio-)chemical processes using infeasibility certificates

Identification of models of heterogeneous cell populations from population snapshot data

Kinetic perturbations as robustness analysis tool for biochemical reaction networks

Modelling and Analysis of Cell Death Signalling

Multistability equivalence between gene regulatory networks of different dimensionality with application to a differentiation network

Network-level dynamics of diffusively coupled cells

Optimization of bioprocess productivity based on metabolic-genetic network models with bilevel dynamic programming.

Pain modulators regulate the dynamics of PKA-RII phosphorylation in subgroups of sensory neurons

Parameter identification, experimental design and model falsification for biological network models using semidefinite programming

Response to bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeability transition pores

Robust signal processing in living cells

Robust stability and instability of biochemical networks with parametric uncertainty

Robustness and Information Transfer within IL-6-induced JAK/STAT Signalling

Rückkopplungen im Leben und Sterben einer Zelle: Ansätze zur systemtheoretischen Analyse (Feedback during Life and Death of a Cell: Approaches for Systems Theoretical Analysis)

Searching bifurcations in high-dimensional parameter space via a feedback loop breaking approach

Sensitivity analysis of programmed cell death and implications for crosstalk phenomena during Tumor Necrosis Factor stimulation

Sensitivity analysis of programmed cell death and implications for crosstalk phenomena during Tumor Necrosis Factor stimulation

Steady state and (bi-) stability evaluation of simple protease signalling networks.

Steady-state robustness of qualitative gene regulation networks

Structural requirements and discrimination of cell differentiation networks