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List of works by Dmitry Nolde

A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation

scientific article

A solvent model for simulations of peptides in bilayers. II. Membrane-spanning alpha-helices.

scientific article

Association of transmembrane helices: what determines assembling of a dimer?

scientific article

Atomic solvation parameters for proteins in a membrane environment. Application to transmembrane alpha-helices

scientific article published on 01 August 1997

Dynamic clustering of lipids in hydrated two-component membranes: results of computer modeling and putative biological impact.

scientific article

Environmental and dynamic effects explain how nisin captures membrane-bound lipid II

scientific article published on 01 June 2020

Factors important for fusogenic activity of peptides: molecular modeling study of analogs of fusion peptide of influenza virus hemagglutinin.

scientific article

Helix Interactions in Membranes:  Lessons from Unrestrained Monte Carlo Simulations

scientific article published on 01 November 2005

Lipid-II forms potential "landing terrain" for lantibiotics in simulated bacterial membrane.

scientific article

Method to assess packing quality of transmembrane alpha-helices in proteins. 1. Parametrization using structural data.

scientific article

Method to assess packing quality of transmembrane alpha-helices in proteins. 2. Validation by "correct vs misleading" test

scientific article published on 20 March 2007

Monte Carlo simulations of voltage-driven translocation of a signal sequence

scientific article published on 01 August 2002

PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes

scientific article published on 25 February 2009

PREDDIMER: a web server for prediction of transmembrane helical dimers

scientific article published on 7 November 2013

Peptides and proteins in membranes: what can we learn via computer simulations?

scientific article

Temperature-sensitive gating of TRPV1 channel as probed by atomistic simulations of its trans- and juxtamembrane domains.

scientific article

The membrane-proximal fusion domain of HIV-1 GP41 reveals sequence-specific and fine-tuning mechanism of membrane binding.

scientific article

Three-dimensional structure of toxin OSK1 from Orthochirus scrobiculosus scorpion venom

scientific article

Three‐dimensional structure of binase in solution ⬇️

scientific article published on July 17, 1998

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