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List of works by Mehdi Ali

BioKEEN: A library for learning and evaluating biological knowledge graph embeddings

preprint

BioKEEN: a library for learning and evaluating biological knowledge graph embeddings

scholarly article

Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework

preprint published on 25 June 2020 that uses PyKEEN for large-scale reproduction and benchmarking

CLEP: A Hybrid Data- and Knowledge- Driven Framework for Generating Patient Representations

preprint published on 04 November 2020

CLEP: a hybrid data- and knowledge-driven framework for generating patient representations

scientific article published in 2021

Identifying Drug Repositioning Candidates using Representation Learning on Heterogeneous Networks ⬇️

conference poster

Integration of Structured Biological Data Sources using Biological Expression Language

BioRxiv scholarly article describing Bio2BEL

Maintenance and Enrichment of Disease Maps in Biological Expression Language ⬇️

conference poster

Predicting Missing Links Using PyKEEN ⬇️

conference paper

PyKEEN 1.0: A Python Library for Training and Evaluating Knowledge Graph Embeddings ⬇️

scientific article

The KEEN Universe - An Ecosystem for Knowledge Graph Embeddings with a Focus on Reproducibility and Transferability

scientific article published in October 2019

The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track

scientific article published on 01 January 2019

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