List of works - Daniel Lundin

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

scientific article

A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins

scientific article

A metagenomics transect into the deepest point of the Baltic Sea reveals clear stratification of microbial functional capacities

scientific article

Basic leucine zipper protein Cnc-C is a substrate and transcriptional regulator of the Drosophila 26S proteasome.

scientific article

Characterization of a REG/PA28 proteasome activator homolog in Dictyostelium discoideum indicates that the ubiquitin- and ATP-independent REGgamma proteasome is an ancient nuclear protease.

scientific article published on May 2009

Cobalamin and microbial plankton dynamics along a coastal to offshore transect in the Eastern North Atlantic Ocean

scientific article published on 21 December 2020

Comparative Analysis of the Nodule Transcriptomes of (Rhamnaceae, Rosales) and (Datiscaceae, Cucurbitales) ⬇️

scientific article published on 14 November 2018

Comparative genomic evidence for a complete nuclear pore complex in the last eukaryotic common ancestor.

scientific article

Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria

scientific article

Consequences of increased terrestrial dissolved organic matter and temperature on bacterioplankton community composition during a Baltic Sea mesocosm experiment.

scientific article

Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL341

scientific article published on 04 July 2019

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.

scientific article

Diversity in Overall Activity Regulation of Ribonucleotide Reductase.

scientific article published on 13 May 2015

Dynamics of Baltic Sea phages driven by environmental changes

scientific article published in 2021

Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts.

scholarly article

Gut microbiome and innate immune response patterns in IgE-associated eczema.

scientific article published on 05 May 2015

High-resolution crystal structures of the flavoprotein NrdI in oxidized and reduced states--an unusual flavodoxin. Structural biology

scientific article

Identification and characterization of a novel botulinum neurotoxin.

scientific article published on 3 August 2017

Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria.

scientific article published on 28 May 2013

Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens

scientific article published in Nature

Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers

scientific article

Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells

scientific article published on 28 September 2018

Microbial consumption of organophosphate esters in seawater under phosphorus limited conditions

scientific article published in Scientific Reports

Microbial metabolic routes in metagenome assembled genomes are mirrored by the mass balance of polycyclic aromatic hydrocarbons in a high altitude lake

scientific article published in 2022

Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations

scientific article published on 20 October 2015

Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters

scientific article published on 21 March 2019

Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

scientific article published in February 2018

Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea.

scientific article published on 24 November 2016

Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic

scientific article published on 21 October 2016

Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system

scientific article published on 8 July 2022

Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments.

scientific article published on 19 January 2016

Response of marine bacterioplankton pH homeostasis gene expression to elevated CO2

article

Structural Mechanism of Allosteric Activity Regulation in a Ribonucleotide Reductase with Double ATP Cones

scientific article

Structure of a ribonucleotide reductase R2 protein radical

scientific article published on 11 October 2023

Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia

scientific article

The Crystal Structure of Thermotoga maritima Class III Ribonucleotide Reductase Lacks a Radical Cysteine Pre-Positioned in the Active Site

scientific article published on 6 July 2015

The Fennoscandian Shield deep terrestrial virosphere suggests slow motion 'boom and burst' cycles

scientific article published on 08 March 2021

The POU/Oct Transcription Factor Pdm1/nub Is Necessary for a Beneficial Gut Microbiota and Normal Lifespan of Drosophila.

scientific article published on 28 May 2016

The evolution of early cellular systems viewed through the lens of biological interactions.

scientific article published on 19 October 2015

The origin and evolution of ribonucleotide reduction

scientific article

Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities.

scientific article

Use of structural phylogenetic networks for classification of the ferritin-like superfamily

scientific article

Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?

scientific article published on 23 April 2012

Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms

scientific article published in 2022

List of works by Daniel Lundin

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins

A metagenomics transect into the deepest point of the Baltic Sea reveals clear stratification of microbial functional capacities

Basic leucine zipper protein Cnc-C is a substrate and transcriptional regulator of the Drosophila 26S proteasome.

Characterization of a REG/PA28 proteasome activator homolog in Dictyostelium discoideum indicates that the ubiquitin- and ATP-independent REGgamma proteasome is an ancient nuclear protease.

Cobalamin and microbial plankton dynamics along a coastal to offshore transect in the Eastern North Atlantic Ocean

Comparative Analysis of the Nodule Transcriptomes of (Rhamnaceae, Rosales) and (Datiscaceae, Cucurbitales) ⬇️

Comparative genomic evidence for a complete nuclear pore complex in the last eukaryotic common ancestor.

Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria

Consequences of increased terrestrial dissolved organic matter and temperature on bacterioplankton community composition during a Baltic Sea mesocosm experiment.

Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL341

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.

Diversity in Overall Activity Regulation of Ribonucleotide Reductase.

Dynamics of Baltic Sea phages driven by environmental changes

Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts.

Gut microbiome and innate immune response patterns in IgE-associated eczema.

High-resolution crystal structures of the flavoprotein NrdI in oxidized and reduced states--an unusual flavodoxin. Structural biology

Identification and characterization of a novel botulinum neurotoxin.

Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria.

Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens

Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers

Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells

Microbial consumption of organophosphate esters in seawater under phosphorus limited conditions

Microbial metabolic routes in metagenome assembled genomes are mirrored by the mass balance of polycyclic aromatic hydrocarbons in a high altitude lake

Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations

Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters

Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea.

Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic

Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system

Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments.

Response of marine bacterioplankton pH homeostasis gene expression to elevated CO2

Structural Mechanism of Allosteric Activity Regulation in a Ribonucleotide Reductase with Double ATP Cones

Structure of a ribonucleotide reductase R2 protein radical

Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia

The Crystal Structure of Thermotoga maritima Class III Ribonucleotide Reductase Lacks a Radical Cysteine Pre-Positioned in the Active Site

The Fennoscandian Shield deep terrestrial virosphere suggests slow motion 'boom and burst' cycles

The POU/Oct Transcription Factor Pdm1/nub Is Necessary for a Beneficial Gut Microbiota and Normal Lifespan of Drosophila.

The evolution of early cellular systems viewed through the lens of biological interactions.

The origin and evolution of ribonucleotide reduction

Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities.

Use of structural phylogenetic networks for classification of the ferritin-like superfamily

Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?

﻿Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms

Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms