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List of works by Kellie J Archer

11q23 balanced chromosome aberrations in treatment-related myelodysplastic syndromes and acute leukemia: report from an international workshop

scientific article published in April 2002

A Generalized Sequential Bonferroni Procedure for GWAS in Admixed Populations Incorporating Admixture Mapping Information into Association Tests

scientific article published on 13 June 2015

A MEIG1/PACRG complex in the manchette is essential for building the sperm flagella

scientific article

A generalized sequential Bonferroni procedure using smoothed weights for genome-wide association studies incorporating information on Hardy-Weinberg disequilibrium among cases.

scientific article published on 30 December 2011

A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis

scientific article

A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy

scientific article

A rapid association test procedure robust under different genetic models accounting for population stratification.

scientific article published on 03 April 2013

Abnormal Cytogenetics at Date of Morphologic Complete Remission Predicts Short Overall and Disease-Free Survival, and Higher Relapse Rate in Adult Acute Myeloid Leukemia: Results From Cancer and Leukemia Group B Study 8461

article

Absence of the wild-type allele predicts poor prognosis in adult de novo acute myeloid leukemia with normal cytogenetics and the internal tandem duplication of FLT3: a cancer and leukemia group B study.

scientific article

An application for assessing quality of RNA hybridized to Affymetrix GeneChips

scientific article

Angiogenesis soluble factors as hepatocellular carcinoma noninvasive markers for monitoring hepatitis C virus cirrhotic patients awaiting liver transplantation.

scientific article

Apolipoprotein E genotypes as predictors of high-risk groups for developing hyperlipidemia in kidney transplant recipients undergoing sirolimus treatment.

scientific article

Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models

scientific article published on 31 August 2005

Author Correction: The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia

scientific article published on 29 July 2020

BAALC expression predicts clinical outcome of de novo acute myeloid leukemia patients with normal cytogenetics: a Cancer and Leukemia Group B Study

scientific article published on 15 May 2003

BAALC, the human member of a novel mammalian neuroectoderm gene lineage, is implicated in hematopoiesis and acute leukemia

scientific article

Bayesian penalized cumulative logit model for high-dimensional data with an ordinal response

scientific article published on 18 December 2020

Biomarkers of disease differentiation: HCV recurrence versus acute cellular rejection

scientific article

Biomechanical attributes of microcatheters used in liquid embolization of intracranial aneurysms.

scientific article

Cervical cancer and human papillomavirus in indigenous Guyanese women.

scientific article

Classical and Bayesian random-effects meta-analysis models with sample quality weights in gene expression studies

article

Comparison of cytogenetic and molecular genetic detection of t(8;21) and inv(16) in a prospective series of adults with de novo acute myeloid leukemia: a Cancer and Leukemia Group B Study

scientific article published on 01 May 2001

Comparison of ordinal and nominal classification trees to predict ordinal expert-based occupational exposure estimates in a case-control study.

scientific article

Computer Simulation, Bioinformatics, and Statistical Analysis of Cancer Data and Processes

scientific article

Correction: Time-Course Analysis of Brain Regional Expression Network Responses to Chronic Intermittent Ethanol and Withdrawal: Implications for Mechanisms Underlying Excessive Ethanol Consumption

scientific article published on 18 June 2019

DNA methylation is altered in maternal blood vessels of women with preeclampsia

scientific article

Data management and statistical methods used in the analysis of balanced chromosome abnormalities in therapy-related myelodysplastic syndromes and therapy-related acute leukemia: report from an international workshop

scientific article published on 01 April 2002

Depletion of the chromatin remodeler CHD4 sensitizes AML blasts to genotoxic agents and reduces tumor formation

scientific article

Depsipeptide (FR 901228) promotes histone acetylation, gene transcription, apoptosis and its activity is enhanced by DNA methyltransferase inhibitors in AML1/ETO-positive leukemic cells.

scientific article

Detection call algorithms for high-throughput gene expression microarray data

scientific article

Differential DNA methylation following chemotherapy for breast cancer is associated with lack of memory improvement at one year

scientific article published on 18 December 2019

Differential gene expression in granulosa cells from polycystic ovary syndrome patients with and without insulin resistance: identification of susceptibility gene sets through network analysis

scientific article published on 17 August 2012

Differentially expressed genes between early and advanced hepatocellular carcinoma (HCC) as a potential tool for selecting liver transplant recipients.

scientific article

Distinctive gene expression profiles characterize donor biopsies from HCV-positive kidney donors.

scientific article published in December 2010

Double genomic control is not effective to correct for population stratification in meta-analysis for genome-wide association studies

scientific article

Effects of DNA Methylation on Progression to Interstitial Fibrosis and Tubular Atrophy in Renal Allograft Biopsies: A Multi-omics Approach

scientific article

Elastic Net Constrained Stereotype Logit Model for Ordered Categorical Data

scientific article published on 20 October 2015

Empirical validation of the S-Score algorithm in the analysis of gene expression data

scientific article

Epigenetic alterations and an increased frequency of micronuclei in women with fibromyalgia

scientific article published on 22 August 2013

Estimation of random effects and identifying heterogeneous genes in meta-analysis of gene expression studies

scientific article published on 26 June 2016

Evaluation of quality-control criteria for microarray gene expression analysis

scientific article

Expression patterns of the chromosome 21 MicroRNA cluster (miR-99a, miR-125b and let-7c) in chorioamniotic membranes

scientific article published on 9 November 2016

Fractal organization of the human T cell repertoire in health and after stem cell transplantation.

scientific article published on 11 January 2013

Gene Expression in HIV-Associated Neurocognitive Disorders: A Meta-Analysis.

scientific article published on December 2015

Gene expression changes are associated with loss of kidney graft function and interstitial fibrosis and tubular atrophy: diagnosis versus prediction.

scientific article

Gene expression patterns in deceased donor kidneys developing delayed graft function after kidney transplantation.

scientific article published on February 2008

Gene expression profiling of peripheral blood leukocytes identifies potential novel biomarkers of chronic obstructive pulmonary disease in current and former smokers

scientific article published on 01 October 2010

Generalized monotone incremental forward stagewise method for modeling count data: application predicting micronuclei frequency.

scientific article

Genes associated with progression and recurrence of hepatocellular carcinoma in hepatitis C patients waiting and undergoing liver transplantation: preliminary results.

scientific article

Genes involved in viral carcinogenesis and tumor initiation in hepatitis C virus-induced hepatocellular carcinoma

scientific article (publication date: 2009)

Genetic Characterization and Prognostic Relevance of Acquired Uniparental Disomies in Cytogenetically Normal Acute Myeloid Leukemia

scientific article published on 02 August 2019

Genomic analysis of individual differences in ethanol drinking: evidence for non-genetic factors in C57BL/6 mice.

scientific article

Graphical technique for identifying a monotonic variance stabilizing transformation for absolute gene intensity signals

scientific article

Hepatitis C virus recurrence after liver transplantation: biomarkers of disease and fibrosis progression.

scientific article published on August 2010

High-throughput DNA methylation datasets for evaluating false discovery rate methodologies.

scientific article

High-throughput assessment of CpG site methylation for distinguishing between HCV-cirrhosis and HCV-associated hepatocellular carcinoma.

scientific article

Histone Deacetylase Inhibitors Interact with Melanoma Differentiation Associated-7/Interleukin-24 to Kill Primary Human Glioblastoma Cells ⬇️

scientific article published on 09 May 2013

Identification of biomarkers to assess organ quality and predict posttransplantation outcomes.

scientific article

Identification of erythroid-enriched gene expression in the mouse embryonic yolk sac using microdissected cells.

scientific article

Identifying Genes for Establishing a Multigenic Test for Hepatocellular Carcinoma Surveillance in Hepatitis C Virus-Positive Cirrhotic Patients

scientific article

Identifying biomarkers as diagnostic tools in kidney transplantation

scientific article

Identifying genes progressively silenced in preneoplastic and neoplastic liver tissues.

scientific article published on 05 August 2010

Identifying molecular features associated with psychoneurological symptoms in women with breast cancer using multivariate mixed models.

scientific article published on 7 May 2015

Increased expression of toll-like receptors 2 and 9 is associated with reduced DNA methylation in spontaneous preterm labor.

scientific article published on 3 June 2017

Isolated trisomy of chromosomes 8, 11, 13 and 21 is an adverse prognostic factor in adults with de novo acute myeloid leukemia: results from Cancer and Leukemia Group B 8461.

scientific article published in November 2002

Kidney grafts from HCV-positive donors: advantages and disadvantages.

scientific article

Kruppel-like factor 1 (KLF1), KLF2, and Myc control a regulatory network essential for embryonic erythropoiesis

scientific article

Krüppel-like factor 2 regulated gene expression in mouse embryonic yolk sac erythroid cells.

scientific article

L1 penalized continuation ratio models for ordinal response prediction using high-dimensional datasets

scientific article published on 23 February 2012

MicroRNA profiles in allograft tissues and paired urines associate with chronic allograft dysfunction with IF/TA.

scientific article

Modeling discrete survival time using genomic feature data.

scientific article

Molecular classification and clonal differentiation of hepatocellular carcinoma: the step forward for patient selection for liver transplantation.

scientific article published on August 2011

Molecular mechanisms involved in the interaction effects of alcohol and hepatitis C virus in liver cirrhosis.

scientific article

Molecular pathways differentiate hepatitis C virus (HCV) recurrence from acute cellular rejection in HCV liver recipients

scientific article published on 20 April 2011

Molecular pathways involved in loss of graft function in kidney transplant recipients.

scientific article published on April 2010

Molecular pathways involved in loss of kidney graft function with tubular atrophy and interstitial fibrosis

scientific article

Molecular profiles of HCV cirrhotic tissues derived in a panel of markers with clinical utility for hepatocellular carcinoma surveillance

scientific article

Molecular techniques for identifying HCC origin and biology after orthotopic liver transplantation.

scientific article

Monoamine oxidase A and childhood adversity as risk factors for conduct disorder in females

scientific article

Multicenter registry of liquid embolic treatment of cerebral aneurysms.

scientific article

Mutations associated with a 17-gene leukemia stem cell score and the score's prognostic relevance in the context of the European LeukemiaNet classification of acute myeloid leukemia

scientific article published on 14 August 2019

Non-additive hepatic gene expression elicited by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and 2,2',4,4',5,5'-hexachlorobiphenyl (PCB153) co-treatment in C57BL/6 mice

scientific article

Ordinal response prediction using bootstrap aggregation, with application to a high-throughput methylation data set

scientific article

Papillary lesions of the breast: To excise or observe?

scientific article published on 27 August 2017

Parametric frailty models for clustered data with arbitrary censoring: application to effect of male circumcision on HPV clearance

scientific article

Partial breast brachytherapy after lumpectomy: low-dose-rate and high-dose-rate experience.

scientific article published in July 2003

Penalized Ordinal Regression Methods for Predicting Stage of Cancer in High-Dimensional Covariate Spaces.

scientific article published on 27 May 2015

Penalized negative binomial models for modeling an overdispersed count outcome with a high-dimensional predictor space: Application predicting micronuclei frequency

scientific article published in PLoS ONE

Polymorphisms in cytokines and growth factor genes and their association with acute rejection and recurrence of hepatitis C virus disease in liver transplantation.

scientific article

Pretransplant Transcriptome Profiles Identify among Kidneys with Delayed Graft Function Those with Poorer Quality and Outcome ⬇️

scientific article published on September 6, 2011

Pretreatment cytogenetics add to other prognostic factors predicting complete remission and long-term outcome in patients 60 years of age or older with acute myeloid leukemia: results from Cancer and Leukemia Group B 8461.

scientific article published on 7 March 2006

Proteomic analysis of HCV cirrhosis and HCV-induced HCC: identifying biomarkers for monitoring HCV-cirrhotic patients awaiting liver transplantation.

scientific article published on January 2009

Pubertal pathways and the relationship to anthropometric changes in childhood: The Fels longitudinal study

scientific article published on June 2012

Publisher Correction: The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia

scientific article published on 07 January 2020

Quality assessment of microarray data in a multicenter study

scientific article

Reduced expression of inflammatory genes in deceased donor kidneys undergoing pulsatile pump preservation

scientific article

Regularization method for predicting an ordinal response using longitudinal high-dimensional genomic data.

scientific article published on February 2015

Response to pain management among patients with active cancer, no evidence of disease, or chronic nonmalignant pain in an outpatient palliative care clinic

scientific article

SScore: an R package for detecting differential gene expression without gene expression summaries.

scientific article

Study of mRNA growth factors in urinary cells of kidney transplant recipients as predictors of chronic allograft nephropathy.

scientific article

The Alternative Splicing of Cytoplasmic Polyadenylation Element Binding Protein 2 Drives Anoikis Resistance and the Metastasis of Triple Negative Breast Cancer

scientific article

The High-Risk Age Window After Pediatric Liver Transplantation: Modeling Allograft Loss Using Mathematical Tools

scientific article

The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia

scientific article published on 25 November 2019

Time-Course Analysis of Brain Regional Expression Network Responses to Chronic Intermittent Ethanol and Withdrawal: Implications for Mechanisms Underlying Excessive Ethanol Consumption

scientific article published on 5 January 2016

Transcriptome at the time of hepatitis C virus recurrence may predict the severity of fibrosis progression after liver transplantation.

scientific article published in July 2011

miRNA Profiling Reveals miRNA-130b-3p Mediates DENND1A Variant 2 Expression and Androgen Biosynthesis

scientific article published on 01 August 2019

ordinalgmifs: An R Package for Ordinal Regression in High-dimensional Data Settings.

scientific article

rpartOrdinal: An R Package for Deriving a Classification Tree for Predicting an Ordinal Response

scientific article

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