List of works - Claus Seidel

A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories

scientific article published in 2022

A toolkit and benchmark study for FRET-restrained high-precision structural modeling.

scientific article

Accurate distance determination of nucleic acids via Förster resonance energy transfer: implications of dye linker length and rigidity

scientific article published on 03 February 2011

Accurate single-molecule FRET studies using multiparameter fluorescence detection

scientific article published on 01 January 2010

An Experimental Comparison of the Maximum Likelihood Estimation and Nonlinear Least-Squares Fluorescence Lifetime Analysis of Single Molecules

scientific article published in May 2001

Analyzing Förster Resonance Energy Transfer with Fluctuation Algorithms

scientific article published on January 1, 2013

Automated and optimally FRET-assisted structural modeling

scientific article published on 26 October 2020

Combining Graphical and Analytical Methods with Molecular Simulations To Analyze Time-Resolved FRET Measurements of Labeled Macromolecules Accurately

scientific article published on 14 July 2017

Combining MFD and PIE for accurate single-pair Förster resonance energy transfer measurements.

scientific article

Detection of Structural Dynamics by FRET: A Photon Distribution and Fluorescence Lifetime Analysis of Systems with Multiple States

article

Determinants of liposome fusion mediated by synaptic SNARE proteins

scholarly article

Diffusion of macromolecules in a polymer hydrogel: from microscopic to macroscopic scales

scientific article published on 22 April 2016

Diphenylhexatrienes as photoprotective agents for ultrasensitive fluorescence detection.

scientific article

Dye-exchange dynamics in micellar solutions studied by fluorescence correlation spectroscopy.

scientific article published on 17 March 2007

Dynamic anticipation by Cdk2/Cyclin A-bound p27 mediates signal integration in cell cycle regulation

scientific article published on 11 April 2019

Dynamics of supramolecular association monitored by fluorescence correlation spectroscopy.

scientific article published on September 2008

Electronic effects on the fluorescence of tyrosine in small peptides

scientific article published on 01 August 1993

Filtered FCS: species auto- and cross-correlation functions highlight binding and dynamics in biomolecules.

scientific article

Fine tuning of sub-millisecond conformational dynamics controls metabotropic glutamate receptors agonist efficacy

scientific article published in Nature Communications

Fluorescence correlation spectroscopy, a tool to investigate supramolecular dynamics: inclusion complexes of pyronines with cyclodextrin.

scientific article published in June 2005

Fluorescence detection with high time resolution: from optical microscopy to simultaneous force and fluorescence spectroscopy.

scientific article

Guanylate binding proteins directly attack Toxoplasma gondii via supramolecular complexes

scientific article published on 27 January 2016

High precision FRET studies reveal reversible transitions in nucleosomes between microseconds and minutes

scientific article published in Nature Communications

Impact of human autoantibodies on β1-adrenergic receptor conformation, activity, and internalization ⬇️

scientific article published on December 3, 2012

Integrated NMR, Fluorescence, and Molecular Dynamics Benchmark Study of Protein Mechanics and Hydrodynamics

scientific article published on 08 January 2019

Mechanochemistry: Molecules under pressure

scientific article published on 01 March 2014

Moderation of Arabidopsis root stemness by CLAVATA1 and ARABIDOPSIS CRINKLY4 receptor kinase complexes.

scientific article

Molecular photobleaching kinetics of Rhodamine 6G by one- and two-photon induced confocal fluorescence microscopy.

scientific article

Monitoring conformational dynamics of a single molecule by selective fluorescence spectroscopy.

scientific article published in February 1998

Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:primer/template complexes.

scholarly article

Note: a 4 ns hardware photon correlator based on a general-purpose field-programmable gate array development board implemented in a compact setup for fluorescence correlation spectroscopy

scientific article published on 01 September 2012

Nucleosome disassembly intermediates characterized by single-molecule FRET.

scholarly article

On the origin of broadening of single-molecule FRET efficiency distributions beyond shot noise limits

scientific article published on 01 May 2010

Optical characteristics of atomic force microscopy tips for single-molecule fluorescence applications

scientific article published on 01 May 2005

Photobleaching of Fluorescent Dyes under Conditions Used for Single-Molecule Detection: Evidence of Two-Step Photolysis

scientific article published on 01 July 1998

Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study

scientific article published on 31 August 2018

Probability distribution analysis of single-molecule fluorescence anisotropy and resonance energy transfer

scientific article published on 03 August 2007

Proton-powered subunit rotation in single membrane-bound F0F1-ATP synthase.

scientific article

Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems

scientific article

Real-time dynamics of peptide ligand-dependent receptor complex formation in planta.

scientific article published on 4 August 2015

Resolving dynamics and function of transient states in single enzyme molecules

scientific article published on 06 March 2020

Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis

scientific article published on 01 April 2006

Single-molecule FRET reveals multiscale chromatin dynamics modulated by HP1α.

scientific article published on 16 January 2018

Single-molecule detection and identification of multiple species by multiparameter fluorescence detection

scientific article published on 01 March 2006

Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1.

scientific article

Single-molecule multiparameter fluorescence spectroscopy reveals directional MutS binding to mismatched bases in DNA ⬇️

scientific article published on February 24, 2012

Structural assemblies of the di- and oligomeric G-protein coupled receptor TGR5 in live cells: an MFIS-FRET and integrative modelling study.

scientific article published on 11 November 2016

Structural changes of yellow Cameleon domains observed by quantitative FRET analysis and polarized fluorescence correlation spectroscopy.

scientific article published on 12 September 2008

Supertertiary structure of the synaptic MAGuK scaffold proteins is conserved ⬇️

scientific article published on September 10, 2012

Temperature-cycle microscopy reveals single-molecule conformational heterogeneity

scientific article published on 01 March 2015

The GTPase activity of murine guanylate-binding protein 2 (mGBP2) controls the intracellular localization and recruitment to the parasitophorous vacuole of Toxoplasma gondii.

scientific article published on 22 June 2012

Triphosphate induced dimerization of human guanylate binding protein 1 involves association of the C-terminal helices: a joint double electron-electron resonance and FRET study

scientific article published on 14 July 2014

Unraveling multi-state molecular dynamics in single-molecule FRET experiments. I. Theory of FRET-lines

scientific article published in 2022

dNTP-dependent conformational transitions in the fingers subdomain of Klentaq1 DNA polymerase: insights into the role of the "nucleotide-binding" state.

scientific article published on 22 March 2013

List of works by Claus Seidel

A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories

A toolkit and benchmark study for FRET-restrained high-precision structural modeling.

Accurate distance determination of nucleic acids via Förster resonance energy transfer: implications of dye linker length and rigidity

Accurate single-molecule FRET studies using multiparameter fluorescence detection

An Experimental Comparison of the Maximum Likelihood Estimation and Nonlinear Least-Squares Fluorescence Lifetime Analysis of Single Molecules

Analyzing Förster Resonance Energy Transfer with Fluctuation Algorithms

Automated and optimally FRET-assisted structural modeling

Combining Graphical and Analytical Methods with Molecular Simulations To Analyze Time-Resolved FRET Measurements of Labeled Macromolecules Accurately

Combining MFD and PIE for accurate single-pair Förster resonance energy transfer measurements.

Detection of Structural Dynamics by FRET: A Photon Distribution and Fluorescence Lifetime Analysis of Systems with Multiple States

Determinants of liposome fusion mediated by synaptic SNARE proteins

Diffusion of macromolecules in a polymer hydrogel: from microscopic to macroscopic scales

Diphenylhexatrienes as photoprotective agents for ultrasensitive fluorescence detection.

Dye-exchange dynamics in micellar solutions studied by fluorescence correlation spectroscopy.

Dynamic anticipation by Cdk2/Cyclin A-bound p27 mediates signal integration in cell cycle regulation

Dynamics of supramolecular association monitored by fluorescence correlation spectroscopy.

Electronic effects on the fluorescence of tyrosine in small peptides

Filtered FCS: species auto- and cross-correlation functions highlight binding and dynamics in biomolecules.

Fine tuning of sub-millisecond conformational dynamics controls metabotropic glutamate receptors agonist efficacy

Fluorescence correlation spectroscopy, a tool to investigate supramolecular dynamics: inclusion complexes of pyronines with cyclodextrin.

Fluorescence detection with high time resolution: from optical microscopy to simultaneous force and fluorescence spectroscopy.

Guanylate binding proteins directly attack Toxoplasma gondii via supramolecular complexes

High precision FRET studies reveal reversible transitions in nucleosomes between microseconds and minutes

Impact of human autoantibodies on β1-adrenergic receptor conformation, activity, and internalization ⬇️

Integrated NMR, Fluorescence, and Molecular Dynamics Benchmark Study of Protein Mechanics and Hydrodynamics

Mechanochemistry: Molecules under pressure

Moderation of Arabidopsis root stemness by CLAVATA1 and ARABIDOPSIS CRINKLY4 receptor kinase complexes.

Molecular photobleaching kinetics of Rhodamine 6G by one- and two-photon induced confocal fluorescence microscopy.

Monitoring conformational dynamics of a single molecule by selective fluorescence spectroscopy.

Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:primer/template complexes.

Note: a 4 ns hardware photon correlator based on a general-purpose field-programmable gate array development board implemented in a compact setup for fluorescence correlation spectroscopy

Nucleosome disassembly intermediates characterized by single-molecule FRET.

On the origin of broadening of single-molecule FRET efficiency distributions beyond shot noise limits

Optical characteristics of atomic force microscopy tips for single-molecule fluorescence applications

Photobleaching of Fluorescent Dyes under Conditions Used for Single-Molecule Detection: Evidence of Two-Step Photolysis

Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study

Probability distribution analysis of single-molecule fluorescence anisotropy and resonance energy transfer

Proton-powered subunit rotation in single membrane-bound F0F1-ATP synthase.

Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems

Real-time dynamics of peptide ligand-dependent receptor complex formation in planta.

Resolving dynamics and function of transient states in single enzyme molecules

Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis

Single-molecule FRET reveals multiscale chromatin dynamics modulated by HP1α.

Single-molecule detection and identification of multiple species by multiparameter fluorescence detection

Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1.

Single-molecule multiparameter fluorescence spectroscopy reveals directional MutS binding to mismatched bases in DNA ⬇️

Structural assemblies of the di- and oligomeric G-protein coupled receptor TGR5 in live cells: an MFIS-FRET and integrative modelling study.

Structural changes of yellow Cameleon domains observed by quantitative FRET analysis and polarized fluorescence correlation spectroscopy.

Supertertiary structure of the synaptic MAGuK scaffold proteins is conserved ⬇️

Temperature-cycle microscopy reveals single-molecule conformational heterogeneity

The GTPase activity of murine guanylate-binding protein 2 (mGBP2) controls the intracellular localization and recruitment to the parasitophorous vacuole of Toxoplasma gondii.

Triphosphate induced dimerization of human guanylate binding protein 1 involves association of the C-terminal helices: a joint double electron-electron resonance and FRET study

Unraveling multi-state molecular dynamics in single-molecule FRET experiments. I. Theory of FRET-lines

dNTP-dependent conformational transitions in the fingers subdomain of Klentaq1 DNA polymerase: insights into the role of the "nucleotide-binding" state.