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List of works by Petr Novak

A reference genome for pea provides insight into legume genome evolution

scientific article published on 02 September 2019

A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons ⬇️

scientific article published on April 29, 2012

Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies

scientific article published on 01 June 2019

Analysis of global and absorption, distribution, metabolism, and elimination gene expression in the progressive stages of human nonalcoholic fatty liver disease.

scientific article

Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

scientific article

Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres

scientific article published on 11 April 2014

Branched chain amino acid metabolism profiles in progressive human nonalcoholic fatty liver disease.

scientific article

Cell-type specific DNA methylation patterns define human breast cellular identity

scientific article

Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea

scientific article published on 20 October 2015

Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species

scientific article published on 13 March 2015

Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species

scientific article published on 19 September 2016

Characterization of a novel radiation-induced sarcoma cell line

scientific article published on 2 February 2015

Characterization of hepatocellular carcinoma related genes and metabolites in human nonalcoholic fatty liver disease.

scientific article published on 19 September 2013

Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences.

scientific article

Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries

scientific article published on 05 November 2020

Cloning and molecular analysis of the regulatory factor HlMyb1 in hop (Humulus lupulus L.) and the potential of hop to produce bioactive prenylated flavonoids

scientific article published in June 2005

Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa.

scientific article published on January 2013

Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae).

scientific article published on 19 March 2018

Decreased hepatotoxic bile acid composition and altered synthesis in progressive human nonalcoholic fatty liver disease.

scientific article published on 4 February 2013

Differential amplification of satellite PaB6 in chromosomally hypervariable Prospero autumnale complex (Hyacinthaceae).

scientific article

Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences

scientific article

Epigenetic inactivation of the HOXA gene cluster in breast cancer

scientific article

Epigenetic remodeling during arsenical-induced malignant transformation.

scientific article published on 30 April 2008

Expression profiling of circulating tumor cells in metastatic breast cancer

scientific article

Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda

scientific article published on 28 June 2019

Genome-wide analysis of repeat diversity across the family Musaceae

scientific article

Genomic repeat abundances contain phylogenetic signal.

scientific article

Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2

scientific article published on 23 October 2020

Global gene expression changes in human urothelial cells exposed to low-level monomethylarsonous acid ⬇️

scientific article published on November 17, 2011

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

scientific article

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

scientific article

Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin.

scientific article

Immortalization of normal human mammary epithelial cells in two steps by direct targeting of senescence barriers does not require gross genomic alterations.

scientific article

Impaired N-linked glycosylation of uptake and efflux transporters in human non-alcoholic fatty liver disease

scientific article published on 18 January 2017

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

scientific article published on 25 November 2015

Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum.

scientific article

Karyotypes and Distribution of Tandem Repeat Sequences in Brassica nigra Determined by Fluorescence in situ Hybridization.

scientific article

Metabolomic profiling distinction of human nonalcoholic fatty liver disease progression from a common rat model.

scientific article published on 28 April 2017

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

scientific article published on 21 April 2011

Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia

scientific article

Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

scientific article published on 21 June 2012

Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes

scientific article published on 27 May 2019

Organization and evolution of subtelomeric satellite repeats in the potato genome.

scientific article published on July 2011

Repeat-sequence turnover shifts fundamentally in species with large genomes

scientific article published on 19 October 2020

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

scientific article published in February 2013

Repeatless and repeat-based centromeres in potato: implications for centromere evolution.

scientific article published on 11 September 2012

Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing.

scientific article published on 11 April 2018

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

scientific article

Stepwise DNA methylation changes are linked to escape from defined proliferation barriers and mammary epithelial cell immortalization.

scientific article published on 09 June 2009

Stretching the rules: monocentric chromosomes with multiple centromere domains

scientific article

Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

scientific article

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

article

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.

scientific article published on 10 April 2017

The Dark Matter of Large Cereal Genomes: Long Tandem Repeats

scientific article published on 20 May 2019

The adaptive endoplasmic reticulum stress response to lipotoxicity in progressive human nonalcoholic fatty liver disease

scientific article published on 04 October 2013

The ecology of palm genomes: repeat‐associated genome size expansion is constrained by aridity

scientific article published in 2022

The giant diploid faba genome unlocks variation in a global protein crop

scientific article published in 2023

The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.

scientific article published on 12 December 2012

Transcription factor binding site enrichment analysis predicts drivers of altered gene expression in nonalcoholic steatohepatitis.

scientific article published on 8 November 2016

p53 induces distinct epigenetic states at its direct target promoters

scientific article

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