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List of works by David M Whiley

001.5 An australia-wide molecular study ofneisseria gonorrhoeaeidentifies frequent occurrence of a key cephalosporin resistance mechanism

article

001.6 Exploring the benefits of molecular testing for gonorrhoea antibiotic resistance surveillance in remote settings

scholarly article by B Hui et al published September 2015 in Sexually Transmitted Infections

002.1 Point-of-care testing and immediate treatment of curable sexually transmitted and genital infections among antenatal women in papua new guinea

002.2 Operational performance of a new molecular-based point-of-care test for diagnosis ofchlamydia trachomatisandneisseria gonorrhoeaeinfection: concordance with conventional laboratory testing

A 5'-nuclease real-time reverse transcriptase-polymerase chain reaction assay for the detection of a broad range of influenza A subtypes, including H5N1.

scientific article published on 2 November 2005

A Neisseria gonorrhoeae strain with a meningococcal mtrR sequence

scientific article

A Novel Duplex Real-Time Reverse-Transcription PCR Assay for the Detection of Influenza A and the Novel Influenza A(H1N1) Strain

scientific article

A cluster of culture positive gonococcal infections but with false negative cppB gene based PCR

scientific article published on October 2005

A comparison of two informative SNP-based strategies for typing Pseudomonas aeruginosa isolates from patients with cystic fibrosis

scientific article

A diagnostic evaluation of a molecular assay used for testing and treating anorectal chlamydia and gonorrhoea infections at the point-of-care in Papua New Guinea

scholarly article by S.G. Badman et al published August 2018 in Clinical Microbiology and Infection

A duplex Neisseria gonorrhoeae real-time polymerase chain reaction assay targeting the gonococcal porA pseudogene and multicopy opa genes.

scientific article

A field evaluation of a new molecular-based point-of-care test for chlamydia and gonorrhoea in remote Aboriginal health services in Australia

scientific article

A multicentre double-blind randomised controlled trial evaluating the efficacy of daily use of antibacterial mouthwash against oropharyngeal gonorrhoea among men who have sex with men: the OMEGA (Oral Mouthwash use to Eradicate GonorrhoeA) study pro

scientific article

A national quality assurance survey of Neisseria gonorrhoeae testing

scientific article published on 3 October 2013

A new confirmatory Neisseria gonorrhoeae real-time PCR assay targeting the porA pseudogene.

scientific article published on 10 July 2004

A new multidrug-resistant strain of Neisseria gonorrhoeae in Australia

scientific article

A new multiplexable, quantitative, real-time system for detection of nucleic acids

A newly reported human polyomavirus, KI virus, is present in the respiratory tract of Australian children

scientific article

A novel point-of-care testing strategy for sexually transmitted infections among pregnant women in high-burden settings: results of a feasibility study in Papua New Guinea

scientific article

A preliminary evaluation of a new GeneXpert (Gx) molecular point-of-care test for the detection of Trichomonas vaginalis.

scientific article published on 23 December 2015

A randomised trial of point-of-care tests for chlamydia and gonorrhoea infections in remote Aboriginal communities: Test, Treat ANd GO- the "TTANGO" trial protocol.

scientific article

A real-time PCR assay for direct characterization of the Neisseria gonorrhoeae GyrA 91 locus associated with ciprofloxacin susceptibility.

scientific article published on 3 November 2015

A real-time PCR assay for the detection of Neisseria gonorrhoeae by LightCycler

scientific article published on 01 February 2002

A real-time PCR assay for the detection of Neisseria gonorrhoeae in genital and extragenital specimens

scientific article published in May 2005

A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers

scientific article published on 28 February 2011

A reliable and easy to transport quality control method for chlamydia and gonorrhoea molecular point of care testing.

scientific article published on 11 January 2018

A retrospective performance evaluation of an adenovirus real-time PCR assay

scientific article published on 14 November 2013

A sensitive, specific, and cost-effective multiplex reverse transcriptase-PCR assay for the detection of seven common respiratory viruses in respiratory samples

scientific article published on May 2004

A simple approach for preparing real-time PCR positive reaction controls for rare or emerging viruses.

scientific article published on 22 April 2010

Alterations of the pilQ gene in Neisseria gonorrhoeae are unlikely contributors to decreased susceptibility to ceftriaxone and cefixime in clinical gonococcal strains

scientific article published on 12 October 2010

An example of competitive inhibition in a monoplex real-time PCR as a cause of reduced fluorescent signal response.

scientific article

Antibiotic perturbation of mixed-strain Pseudomonas aeruginosa infection in patients with cystic fibrosis

scientific article published on 2 November 2017

Applications of molecular testing in clinical laboratories for the diagnosis and control of gonorrhea

scientific article published on October 2006

Azithromycin-resistant Neisseria gonorrhoeae spreading amongst men who have sex with men (MSM) and heterosexuals in New South Wales, Australia, 2017.

scientific article published on 24 January 2018

Changes in the rates of Neisseria gonorrhoeae antimicrobial resistance are primarily driven by dynamic fluctuations in common gonococcal genotypes.

scientific article published on 20 December 2016

Characterization of a novel Neisseria gonorrhoeae penicillinase-producing plasmid isolated in Australia in 2012

scientific article published on 2 June 2014

Co-detection and discrimination of six human herpesviruses by multiplex PCR-ELAHA.

scientific article published in December 2003

Comparing nose-throat swabs and nasopharyngeal aspirates collected from children with symptoms for respiratory virus identification using real-time polymerase chain reaction.

scientific article

Comparison of test specificities of commercial antigen-based assays and in-house PCR methods for detection of rotavirus in stool specimens

scientific article

Comparison of three in-house multiplex PCR assays for the detection of Neisseria gonorrhoeae and Chlamydia trachomatis using real-time and conventional detection methodologies

scientific article published on October 2005

Cooperative Recognition of Internationally Disseminated Ceftriaxone-Resistant Neisseria gonorrhoeae Strain.

scientific article

CtGEM typing: Discrimination of Chlamydia trachomatis ocular and urogenital strains and major evolutionary lineages by high resolution melting analysis of two amplified DNA fragments.

scientific article published on 10 April 2018

Decreased susceptibility to cephalosporins among gonococci?

Detection and differentiation of Plasmodium species by polymerase chain reaction and colorimetric detection in blood samples of patients with suspected malaria

scientific article published in May 2004

Detection and differentiation of herpes simplex virus types 1 and 2 by a duplex LightCycler PCR that incorporates an internal control PCR reaction

scientific article published in May 2004

Detection and differentiation of human polyomaviruses JC and BK by LightCycler PCR.

scientific article

Detection of BK, JC, WU, or KI polyomaviruses in faecal, urine, blood, cerebrospinal fluid and respiratory samples.

scientific article

Detection of Neisseria Meningitidis in Clinical Samples by a Duplex Real-Time PCR Targeting the porA and ctrA Genes

article

Detection of Neisseria gonorrhoeae Isolates from Tonsils and Posterior Oropharynx

scientific article

Detection of Neisseria meningitidis by LightCycler PCR

scientific article published on 01 August 2003

Detection of human bocavirus in respiratory, fecal, and blood samples by real-time PCR.

scientific article

Detection of human respiratory syncytial virus in respiratory samples by LightCycler reverse transcriptase PCR.

scientific article

Detection of novel influenza A(H1N1) virus by real-time RT-PCR.

scientific article published on 6 June 2009

Detection of viruses in weekly stool specimens collected during the first 2 years of life: A pilot study of five healthy Australian infants in the rotavirus vaccine era.

scientific article

Development and evaluation of real-time PCR assays for the detection of the newly identified KI and WU polyomaviruses

article

Direct Detection of penA Gene Associated with Ceftriaxone-Resistant Neisseria gonorrhoeae FC428 Strain by Using PCR

article

Direct real-time PCR-based detection of Neisseria gonorrhoeae 23S rRNA mutations associated with azithromycin resistance.

scientific article published on 3 September 2015

Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?

scientific article published on August 2013

Diversity of penA alterations and subtypes in Neisseria gonorrhoeae strains from Sydney, Australia, that are less susceptible to ceftriaxone

scientific article published on 25 June 2007

Effectiveness of a cough management algorithm at the transitional phase from acute to chronic cough in Australian children aged <15 years: protocol for a randomised controlled trial

scientific article published on 03 March 2017

Enhancing gonococcal antimicrobial resistance surveillance: a real-time PCR assay for detection of penicillinase-producing Neisseria gonorrhoeae by use of noncultured clinical samples

scientific article

Enhancing influenza diagnostics to catch a shifting target

scientific article

Estimating the prevalence of mixed-type gonococcal infections in Queensland, Australia

scientific article

Evaluation of phenotypic screening tests for carbapenemase production in Pseudomonas aeruginosa from patients with cystic fibrosis

scientific article published on 10 February 2015

Evaluation of the cobas 4800 CT/NG test for detecting Chlamydia trachomatis and Neisseria gonorrhoeae

scientific article published on 18 August 2010

Evidence that the gonococcal porA pseudogene is present in a broad range of Neisseria gonorrhoeae strains; suitability as a diagnostic target.

scientific article

Experimentally induced blood-stage Plasmodium vivax infection in healthy volunteers.

scientific article published on August 2013

Exploring 'best practice' for nucleic acid detection of Neisseria gonorrhoeae

scientific article published on March 2008

Exploring the Benefits of Molecular Testing for Gonorrhoea Antibiotic Resistance Surveillance in Remote Settings

scientific article published on 16 July 2015

False-Negative Results in Nucleic Acid Amplification Tests—Do We Need to Routinely Use Two Genetic Targets in all Assays to Overcome Problems Caused by Sequence Variation?

scientific article published on 01 January 2008

From zero to zero in 100 years: gonococcal antimicrobial resistance

Further evidence to support the individualised treatment of gonorrhoea with ciprofloxacin

article

Further questions regarding the role of mosaic penA sequences in conferring reduced susceptibility to ceftriaxone in Neisseria gonorrhoeae

scientific article published on 13 November 2006

Genetic characterisation of Neisseria gonorrhoeae resistant to both ceftriaxone and azithromycin

scientific article published on 01 July 2018

Genotypic Diversity within a Single Pseudomonas aeruginosa Strain Commonly Shared by Australian Patients with Cystic Fibrosis

scientific article

Gonococcal antimicrobial resistance in the Western Pacific Region

scientific article published on December 2013

High levels of macrolide-resistant Mycoplasma genitalium in Queensland, Australia

scientific article published on 12 September 2017

High-throughput informative single nucleotide polymorphism-based typing of Neisseria gonorrhoeae using the Sequenom MassARRAY iPLEX platform

scientific article published on 26 January 2014

High-throughput molecular typing of microbes using the Sequenom Massarray platform

High-throughput single-nucleotide polymorphism-based typing of shared Pseudomonas aeruginosa strains in cystic fibrosis patients using the Sequenom iPLEX platform

scientific article

Identification of Australian human respiratory syncytial virus strains containing a 60-nucleotide duplication within the G glycoprotein gene

scientific article published in October 2008

Identification of Mycobacterium abscessus complex and M. abscessus subsp. massiliense culture isolates by real-time assays

article

Identification of Pseudomonas aeruginosa by a duplex real-time polymerase chain reaction assay targeting the ecfX and the gyrB genes

scientific article published on 21 November 2008

Identification of a novel polyomavirus from patients with acute respiratory tract infections

scientific article published on 4 May 2007

Identification of carbapenem-resistant Pseudomonas aeruginosa in selected hospitals of the Gulf Cooperation Council States: dominance of high-risk clones in the region.

scientific article published on 17 April 2018

Identifying factors that lead to the persistence of imported gonorrhoeae strains: a modelling study

scientific article published on 18 October 2016

Impact of competitive inhibition and sequence variation upon the sensitivity of malaria PCR.

scientific article published on 28 February 2007

Low positive predictive value of a nucleic acid amplification test for nongenital Neisseria gonorrhoeae infection in homosexual men.

scientific article published on July 2008

Mailed versus frozen transport of nasal swabs for surveillance of respiratory bacteria in remote Indigenous communities in Australia

scientific article

Melting curve analysis using hybridisation probes: limitations in microbial molecular diagnostics.

scientific article

Merkel cell polyomavirus DNA in respiratory specimens from children and adults

scientific article published on March 2009

MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction

scientific article published on 25 June 2021

Mixed gonococcal infections in a high-risk population, Sydney, Australia 2015: implications for antimicrobial resistance surveillance?

scientific article

Modelling response strategies for controlling gonorrhoea outbreaks in men who have sex with men in Australia

scientific article published on 04 November 2021

Molecular Antimicrobial Resistance Surveillance for Neisseria gonorrhoeae, Northern Territory, Australia

scientific article

Molecular approaches to enhance surveillance of gonococcal antimicrobial resistance

scientific article published on 10 February 2014

Molecular assays for detection of human metapneumovirus

scientific article

Molecular point-of-care testing for chlamydia and gonorrhoea in Indigenous Australians attending remote primary health services (TTANGO): a cluster-randomised, controlled, crossover trial

Molecular test for chlamydia and gonorrhoea used at point of care in remote primary healthcare settings: a diagnostic test evaluation.

scientific article

Multitarget PCR Assay for Direct Detection of Penicillinase-Producing Neisseria gonorrhoeae for Enhanced Surveillance of Gonococcal Antimicrobial Resistance

scientific article published on 20 May 2015

Multivalent rotavirus vaccine and wild-type rotavirus strain shedding in Australian infants: a birth cohort study

scientific article published on 15 November 2017

Nasal swab samples and real-time polymerase chain reaction assays in community-based, longitudinal studies of respiratory viruses: the importance of sample integrity and quality control

scientific article published on 09 January 2014

Neisseria gonorrhoeae Sequence Typing for Antimicrobial Resistance, a Novel Antimicrobial Resistance Multilocus Typing Scheme for Tracking Global Dissemination of N. gonorrhoeae Strains

scientific article published on 22 February 2017

Neisseria gonorrhoeae isolates with high-level resistance to azithromycin in Australia

article

Neisseria gonorrhoeae multi-antigen sequence typing using non-cultured clinical specimens.

scientific article

Nucleic acid amplification testing for Neisseria gonorrhoeae: an ongoing challenge

scientific article published on February 2006

Opportunities and pitfalls of molecular testing for detecting sexually transmitted pathogens

scientific article published on April 2015

P09.09 Exploring the relationship between importation frequency and the persistence of gonorrhoea strains in an msm population: a modelling study

Penicillinase-producing plasmid types in Neisseria gonorrhoeae clinical isolates from Australia

scientific article

Persistence of Neisseria gonorrhoeae DNA following treatment for pharyngeal and rectal gonorrhea is influenced by antibiotic susceptibility and reinfection

scientific article published on 3 November 2014

Point-of-care testing and treatment of sexually transmitted infections to improve birth outcomes in high-burden, low-income settings: Study protocol for a cluster randomized crossover trial (the WANTAIM Trial, Papua New Guinea)

Point-of-care testing and treatment of sexually transmitted infections to improve birth outcomes in high-burden, low-income settings: Study protocol for a cluster randomized crossover trial (the WANTAIM Trial, Papua New Guinea)

scientific article published on 22 March 2019

Point-of-care tests for the diagnosis of Neisseria gonorrhoeae infection: a systematic review of operational and performance characteristics

scientific article published on 23 October 2012

Preliminary comparison of three LightCycler PCR assays for the detection of herpes simplex virus in swab specimens.

scientific article published on 7 November 2003

Presence of the newly discovered human polyomaviruses KI and WU in Australian patients with acute respiratory tract infection.

scientific article published in February 2008

Prevalence, codetection and seasonal distribution of upper airway viruses and bacteria in children with acute respiratory illnesses with cough as a symptom.

scientific article

Prospects of untreatable gonorrhea and ways forward

scientific article published on January 2015

Public health implications of molecular point-of-care testing for chlamydia and gonorrhoea in remote primary care services in Australia: a qualitative study

scientific article published on 28 April 2015

Rapid detection of a chromosomally mediated penicillin resistance-associated ponA mutation in Neisseria gonorrhoeae using a real-time PCR assay.

scientific article

Real-time PCR detection of Neisseria gonorrhoeae susceptibility to penicillin.

scientific article published on 25 July 2016

Reduced susceptibility to ceftriaxone in Neisseria gonorrhoeae is associated with mutations G542S, P551S and P551L in the gonococcal penicillin-binding protein 2.

scientific article published on 28 May 2010

Reduced susceptibility to ceftriaxone in Neisseria gonorrhoeae is spread internationally by genetically distinct gonococcal populations

scientific article published on 24 February 2011

Replacement of healthcare-associated MRSA by community-associated MRSA in Queensland: Confirmation by genotyping

article

Respiratory Viruses in Neonates: A Prospective, Community-based Birth Cohort Study

scientific article published on 30 August 2016

Retrospective review of T. pallidum PCR and serology results: Are both tests necessary?

scientific article published on 14 February 2018

S11.1 Real-time pcr detection ofn. gonorrhoeaeresistance: where are we now?

Sampling technique is important for optimal isolation of pharyngeal gonorrhoea

scientific article published on 21 May 2013

Screening for H7N9 influenza A by matrix gene-based real-time reverse-transcription PCR.

scientific article

Sequence variation can affect the performance of minor groove binder TaqMan probes in viral diagnostic assays

scientific article

Simple, rapid, and inexpensive detection of Neisseria gonorrhoeae resistance mechanisms using heat-denatured isolates and SYBR green-based real-time PCR.

scientific article published on 15 June 2009

Simultaneous detection and differentiation of human polyomaviruses JC and BK by a rapid and sensitive PCR-ELAHA assay and a survey of the JCV subtypes within an Australian population

article

Successful application of a simple specimen transport method for the conduct of respiratory virus surveillance in remote Indigenous communities in Australia

scientific article

Supplemental testing is still required in australia for samples positive for Neisseria gonorrhoeae by nucleic acid detection tests.

scientific article published in November 2006

The Australian Gonococcal Surveillance Programme 1979?2017

article

The Molecular Epidemiology and Antimicrobial Resistance of Neisseria gonorrhoeae in Australia: A Nationwide Cross-Sectional Study, 2012.

scientific article published on 28 September 2016

Treatment guidelines after an outbreak of azithromycin-resistant Neisseria gonorrhoeae in South Australia

scientific article published in February 2017

Two cases of failed ceftriaxone treatment in pharyngeal gonorrhoea verified by molecular microbiological methods

scientific article published on May 2009

Upper airway viruses and bacteria and clinical outcomes in children with cough

scientific article published on 26 July 2016

Upper airway viruses and bacteria detection in clinical pneumonia in a population with high nasal colonisation do not relate to clinical signs

scientific article published on 01 December 2015

Use of a novel screening PCR indicates presence of Neisseria gonorrhoeae isolates with a mosaic penA gene sequence in Australia

article

Use of whole genome sequencing to investigate an increase in Neisseria gonorrhoeae infection among women in urban areas of Australia

scientific article

Viral-bacterial co-infection in Australian Indigenous children with acute otitis media

scientific article

Viruses causing lower respiratory symptoms in young children: findings from the ORChID birth cohort.

scientific article published on 15 December 2017

Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

scientific article published on 30 August 2018

Within-host whole genome analysis of an antibiotic resistant Pseudomonas aeruginosa strain sub-type in cystic fibrosis

scientific article

Young Aboriginal people

scientific article published on 03 August 2020

Young Aboriginal people's engagement with STI testing in the Northern Territory, Australia

scientific article published on 06 April 2020

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