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List of works by Manuel Ruiz

A drought stress transcriptome profiling as the first genomic resource for white teak - Gamhar - (Gmelina arborea Roxb) and related species.

scientific article

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.

scientific article published on 4 August 2016

Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence-structure-function analysis

scientific article published on 14 August 2019

Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton

scientific article

Domestication rewired gene expression and nucleotide diversity patterns in tomato.

scientific article

Evolutionary forces affecting synonymous variations in plant genomes.

scientific article

Generation Challenge Programme (GCP): standards for crop data

scientific article

Genetic Diversity and Population Structure in a European Collection of Rice

scientific article

Gigwa-Genotype investigator for genome-wide analyses.

scientific article

Insights into the Musa genome: syntenic relationships to rice and between Musa species

scientific article

Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library.

scientific article

SAT, a flexible and optimized Web application for SSR marker development

scientific article

SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations.

scientific article published on 3 June 2015

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

scientific article (publication date: July 2014)

The Generation Challenge Programme comparative plant stress-responsive gene catalogue

scientific article

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

scientific article

The banana genome hub.

scientific article published on 23 May 2013

The generation challenge programme platform: semantic standards and workbench for crop science

scientific article

The genome of Theobroma cacao

scientific article

Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions

scientific article

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima).

scientific article published on 18 April 2014

TropGENE-DB, a multi-tropical crop information system.

scientific article published on January 2004

TropGeneDB, the multi-tropical crop information system updated and extended.

scientific article published on 17 November 2012

Using TropGeneDB: A Database Containing Data on Molecular Markers, QTLs, Maps, Genotypes, and Phenotypes for Tropical Crops

scientific article

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