List of works by Holger H. Hoos

A new algorithm for RNA secondary structure design

scientific article

A note on improving the performance of approximation algorithms for radiation therapy

scholarly article by Therese Biedl et al published March 2011 in Information Processing Letters

A replica exchange Monte Carlo algorithm for protein folding in the HP model.

scientific article

A thermodynamic approach to designing structure-free combinatorial DNA word sets.

scientific article

AClib: A Benchmark Library for Algorithm Configuration

ASlib: A benchmark library for algorithm selection

Algorithm Configuration in the Cloud: A Feasibility Study

Algorithm runtime prediction: Methods & evaluation

An Improved Ant Colony Optimisation Algorithm for the 2D HP Protein Folding Problem

scientific article (publication date: 2003)

An adaptive bin framework search method for a beta-sheet protein homopolymer model.

scientific article

An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem

scientific article

An evaluation of sequential model-based optimization for expensive blackbox functions

An experimental investigation of model-based parameter optimisation

Analysing differences between algorithm configurations through ablation

Analysis of energy-based algorithms for RNA secondary structure prediction

scientific article

Auto-WEKA: combined selection and hyperparameter optimization of classification algorithms

scholarly article by Chris Thornton et al published 2013 in Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining

Automated Configuration of Mixed Integer Programming Solvers

Automatic construction of parallel portfolios via algorithm configuration

Automatically Configuring Multi-objective Local Search Using Multi-objective Optimisation

Cognitive Principles for Information Management: The Principles of Mnemonic Associative Knowledge (P-MAK)

Computational RNA secondary structure design: empirical complexity and improved methods

scientific article

Computational approaches for RNA energy parameter estimation

scientific article

Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.

scientific article

Critical assessment of automated flow cytometry data analysis techniques

Critical assessment of automated flow cytometry data analysis techniques

Critical assessment of automated flow cytometry data analysis techniques.

scientific article

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays.

scientific article

Efficient parameter estimation for RNA secondary structure prediction

scientific article published in July 2007

Enhanced flowType/RchyOptimyx: a BioConductor pipeline for discovery in high-dimensional cytometry data

scientific article

Ensemble-based prediction of RNA secondary structures

scientific article

Evaluating Component Solver Contributions to Portfolio-Based Algorithm Selectors

article published in 2012

Filling Your Shelves: Synthesizing Diverse Style-Preserving Artifact Arrangements

scientific article published on November 2014

HAL: A Framework for the Automated Analysis and Design of High-Performance Algorithms

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

scientific article published on October 2005

Identifying Key Algorithm Parameters and Instance Features Using Forward Selection

article by Frank Hutter et al published 2013 in Lecture Notes in Computer Science

Inference of transcriptional regulation relationships from gene expression data

scientific article

Leveraging TSP Solver Complementarity through Machine Learning.

scientific article published on 24 August 2017

MO-ParamILS: A Multi-objective Automatic Algorithm Configuration Framework

On the empirical scaling of run-time for finding optimal solutions to the travelling salesman problem

On the empirical time complexity of finding optimal solutions vs proving optimality for Euclidean TSP instances

article by Holger H. Hoos & Thomas Stützle published 28 November 2014 in Optimization Letters

Performance Prediction and Automated Tuning of Randomized and Parametric Algorithms

scholarly article by Frank Hutter et al published 2006 in Lecture Notes in Computer Science

Preface

Preference-Based Constrained Optimization with CP-Nets

article by Craig Boutilier et al published May 2004 in Computational Intelligence

Programming by optimization

Quantifying the Similarity of Algorithm Configurations

RNA STRAND: the RNA secondary structure and statistical analysis database

scientific article

RNAsoft: A suite of RNA secondary structure prediction and design software tools ⬇️

scientific article

Rapid cell population identification in flow cytometry data

scientific article

RchyOptimyx: cellular hierarchy optimization for flow cytometry

scientific article

SATenstein: Automatically building local search SAT solvers from components

SATzilla-07: The Design and Analysis of an Algorithm Portfolio for SAT

Sequential Model-Based Optimization for General Algorithm Configuration

Sequential Model-Based Parameter Optimization: an Experimental Investigation of Automated and Interactive Approaches

Static and Dynamic Portfolio Methods for Optimal Planning: An Empirical Analysis

The Configurable SAT Solver Challenge (CSSC)

Thermodynamically based DNA strand design.

scientific article

Time-Bounded Sequential Parameter Optimization

Towards a characterisation of the behaviour of stochastic local search algorithms for SAT

Tradeoffs in the empirical evaluation of competing algorithm designs

Understanding Random SAT: Beyond the Clauses-to-Variables Ratio

Understanding the empirical hardness ofNP-complete problems

aspeed: Solver scheduling via answer set programming

claspfolio 2: Advances in Algorithm Selection for Answer Set Programming

– Ant System

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