List of works - Holger H. Hoos

Critical assessment of automated flow cytometry data analysis techniques.

scientific article

RNA STRAND: the RNA secondary structure and statistical analysis database

scientific article

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

scientific article published on October 2005

Rapid cell population identification in flow cytometry data

scientific article

Efficient parameter estimation for RNA secondary structure prediction

scientific article published in July 2007

A new algorithm for RNA secondary structure design

scientific article

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays.

scientific article

RNAsoft: A suite of RNA secondary structure prediction and design software tools

scientific article

Computational approaches for RNA energy parameter estimation

scientific article

RchyOptimyx: cellular hierarchy optimization for flow cytometry

scientific article

An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem

scientific article

Auto-WEKA: combined selection and hyperparameter optimization of classification algorithms

scholarly article by Chris Thornton et al published 2013 in Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining

Sequential Model-Based Optimization for General Algorithm Configuration

A replica exchange Monte Carlo algorithm for protein folding in the HP model

scientific article

Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.

scientific article

Computational RNA secondary structure design: empirical complexity and improved methods

scientific article

Analysis of energy-based algorithms for RNA secondary structure prediction

scientific article

Inference of transcriptional regulation relationships from gene expression data

scientific article

Enhanced flowType/RchyOptimyx: a BioConductor pipeline for discovery in high-dimensional cytometry data

scientific article

– Ant System

Thermodynamically based DNA strand design.

scientific article

Ensemble-based prediction of RNA secondary structures

scientific article

A thermodynamic approach to designing structure-free combinatorial DNA word sets.

scientific article

Understanding Random SAT: Beyond the Clauses-to-Variables Ratio

Algorithm runtime prediction: Methods & evaluation

Critical assessment of automated flow cytometry data analysis techniques

Filling Your Shelves: Synthesizing Diverse Style-Preserving Artifact Arrangements

scientific article published on November 2014

Programming by optimization

Preference-Based Constrained Optimization with CP-Nets

article by Craig Boutilier et al published May 2004 in Computational Intelligence

aspeed: Solver scheduling via answer set programming

Performance Prediction and Automated Tuning of Randomized and Parametric Algorithms

scholarly article by Frank Hutter et al published 2006 in Lecture Notes in Computer Science

SATzilla-07: The Design and Analysis of an Algorithm Portfolio for SAT

Critical assessment of automated flow cytometry data analysis techniques

MO-ParamILS: A Multi-objective Automatic Algorithm Configuration Framework

Automated Configuration of Mixed Integer Programming Solvers

ASlib: A benchmark library for algorithm selection

AClib: A Benchmark Library for Algorithm Configuration

claspfolio 2: Advances in Algorithm Selection for Answer Set Programming

Preface

Algorithm Configuration in the Cloud: A Feasibility Study

An experimental investigation of model-based parameter optimisation

An Improved Ant Colony Optimisation Algorithm for the 2D HP Protein Folding Problem

scientific article (publication date: 2003)

SATenstein: Automatically building local search SAT solvers from components

Q59586167

article published in 2000

Understanding the empirical hardness ofNP-complete problems

Evaluating Component Solver Contributions to Portfolio-Based Algorithm Selectors

article published in 2012

Time series representations classroom (TSRC): a teacher-student-based framework for interpretability-enhanced unsupervised time series representation learning

List of works by Holger H. Hoos

Critical assessment of automated flow cytometry data analysis techniques.

RNA STRAND: the RNA secondary structure and statistical analysis database

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

Rapid cell population identification in flow cytometry data

Efficient parameter estimation for RNA secondary structure prediction

A new algorithm for RNA secondary structure design

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays.

RNAsoft: A suite of RNA secondary structure prediction and design software tools

Computational approaches for RNA energy parameter estimation

RchyOptimyx: cellular hierarchy optimization for flow cytometry

An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem

Auto-WEKA: combined selection and hyperparameter optimization of classification algorithms

Sequential Model-Based Optimization for General Algorithm Configuration

A replica exchange Monte Carlo algorithm for protein folding in the HP model

Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.

Computational RNA secondary structure design: empirical complexity and improved methods

Analysis of energy-based algorithms for RNA secondary structure prediction

Inference of transcriptional regulation relationships from gene expression data

Enhanced flowType/RchyOptimyx: a BioConductor pipeline for discovery in high-dimensional cytometry data

– Ant System

Thermodynamically based DNA strand design.

Ensemble-based prediction of RNA secondary structures

A thermodynamic approach to designing structure-free combinatorial DNA word sets.

Understanding Random SAT: Beyond the Clauses-to-Variables Ratio

Algorithm runtime prediction: Methods & evaluation

Critical assessment of automated flow cytometry data analysis techniques

Filling Your Shelves: Synthesizing Diverse Style-Preserving Artifact Arrangements

Programming by optimization

Preference-Based Constrained Optimization with CP-Nets

aspeed: Solver scheduling via answer set programming

Performance Prediction and Automated Tuning of Randomized and Parametric Algorithms

SATzilla-07: The Design and Analysis of an Algorithm Portfolio for SAT

Critical assessment of automated flow cytometry data analysis techniques

MO-ParamILS: A Multi-objective Automatic Algorithm Configuration Framework

Automated Configuration of Mixed Integer Programming Solvers

ASlib: A benchmark library for algorithm selection

AClib: A Benchmark Library for Algorithm Configuration

claspfolio 2: Advances in Algorithm Selection for Answer Set Programming

Preface

Algorithm Configuration in the Cloud: A Feasibility Study

An experimental investigation of model-based parameter optimisation

An Improved Ant Colony Optimisation Algorithm for the 2D HP Protein Folding Problem

SATenstein: Automatically building local search SAT solvers from components

Q59586167

Understanding the empirical hardness ofNP-complete problems

Evaluating Component Solver Contributions to Portfolio-Based Algorithm Selectors

Time series representations classroom (TSRC): a teacher-student-based framework for interpretability-enhanced unsupervised time series representation learning

An evaluation of sequential model-based optimization for expensive blackbox functions

Robustness Margin: A New Measure for the Robustness of Neural Networks

A survey on semi-supervised learning