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List of works by Daisuke Kohda

"Multiple partial recognitions in dynamic equilibrium" in the binding sites of proteins form the molecular basis of promiscuous recognition of structurally diverse ligands

scientific article

1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin

scientific article

1H, 13C and 15N backbone resonance assignments of the N-terminal domain of Drosophila GCM protein

scientific article published on 01 July 2003

A critical role of the 3' terminus of nascent DNA chains in recognition of stalled replication forks.

scientific article published on 13 August 2003

A region C-terminal to the proline-rich core of p47phox regulates activation of the phagocyte NADPH oxidase by interacting with the C-terminal SH3 domain of p67phox

scientific article

A simplified recipe for assigning amide NMR signals using combinatorial 14N amino acid inverse-labeling.

scientific article

A site-directed mutagenesis study on the role of isoleucine-23 of human epidermal growth factor in the receptor binding

scientific article published on 01 April 1992

Activation of the MCM helicase from the thermophilic archaeon, Thermoplasma acidophilum by interactions with GINS and Cdc6-2.

scientific article published on 9 August 2014

Asn-linked oligosaccharide chain of a crenarchaeon, Pyrobaculum calidifontis, is reminiscent of the eukaryotic high-mannose-type glycan.

scientific article published on 16 May 2017

Biophysical characterization of O-glycosylated CD99 recognition by paired Ig-like type 2 receptors.

scientific article published on 30 January 2008

Biophysics at Kyushu University

scientific article published on 17 February 2020

Blockade of inflammatory responses by a small-molecule inhibitor of the Rac activator DOCK2.

scientific article

Characterization of pH titration shifts for all the nonlabile proton resonances a protein by two-dimensional NMR: the case of mouse epidermal growth factor

scientific article published on 01 May 1991

Characterization of the N-oligosaccharides attached to the atypical Asn-X-Cys sequence of recombinant human epidermal growth factor receptor

scientific article published on 01 January 2000

Comparative Analysis of Archaeal Lipid-linked Oligosaccharides That Serve as Oligosaccharide Donors for Asn Glycosylation.

scientific article published on 25 March 2016

Complete sequence-specific 1H nuclear magnetic resonance assignments for mouse epidermal growth factor

scientific article published on 01 March 1988

Computational Investigation of the Conformational Dynamics in Tom20-Mitochondrial Presequence Tethered Complexes

scientific article published on 16 November 2018

Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site.

scientific article

Crystal structure of measles virus hemagglutinin provides insight into effective vaccines

scientific article

Crystal structure of the C-terminal globular domain of oligosaccharyltransferase from Archaeoglobus fulgidus at 1.75 Å resolution

scientific article published on May 14, 2012

Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases

scientific article

Crystal structure of the human monocyte-activating receptor, "Group 2" leukocyte Ig-like receptor A5 (LILRA5/LIR9/ILT11).

scientific article

Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation

scientific article

Crystallization and preliminary X-ray analysis of mitochondrial presequence receptor Tom20 in complexes with a presequence from aldehyde dehydrogenase

scientific article published on 22 April 2005

Crystallization and preliminary X-ray analysis of the mRNA-binding domain of elongation factor SelB in complex with RNA.

scientific article

Crystallographic and NMR Evidence for Flexibility in Oligosaccharyltransferases and Its Catalytic Significance ⬇️

scientific article published on November 21, 2012

Crystallographic snapshots of Tom20-mitochondrial presequence interactions with disulfide-stabilized peptides

scientific article

DNA binding of PriA protein requires cooperation of the N-terminal D-loop/arrested-fork binding and C-terminal helicase domains.

scientific article published on 31 July 2002

Detection of weak ligand interactions of leukocyte Ig-like receptor B1 by fluorescence correlation spectroscopy.

scientific article published on 22 December 2006

Direct visualization of DNA baton pass between replication factors bound to PCNA

scientific article published in Scientific Reports

Disordered interdomain region of Gins is important for functional tetramer formation to stimulate MCM helicase in Thermoplasma acidophilum.

scientific article published on 24 November 2014

Disulfide bond structure of human epidermal growth factor receptor.

scientific article

Dual role of the receptor Tom20 in specificity and efficiency of protein import into mitochondria.

scientific article

Efficient leukocyte Ig-like receptor signaling and crystal structure of disulfide-linked HLA-G dimer.

scientific article published on 2 February 2006

Energetics of the Presequence-Binding Poses in Mitochondrial Protein Import Through Tom20 ⬇️

scientific article published on March 5, 2013

Escherichia coli PriA protein, two modes of DNA binding and activation of ATP hydrolysis.

scientific article published on 4 May 2007

Extensive polymorphisms of LILRB1 (ILT2, LIR1) and their association with HLA-DRB1 shared epitope negative rheumatoid arthritis

scientific article published on 13 July 2005

Homogeneous sugar modification improves crystallization of measles virus hemagglutinin.

scientific article

Identification of the receptor-recognition surface of bombyxin-II, an insulin-like peptide of the silkmoth Bombyx mori: critical importance of the B-chain central part.

scientific article published on November 1995

Ligand-binding enhances the affinity of dimerization of the extracellular domain of the epidermal growth factor receptor.

scientific article published on July 1997

Mosaic Cooperativity in Slow Polypeptide Topological Isomerization Revealed by Residue-Specific NMR Thermodynamic Analysis

scientific article published on 25 February 2020

N-Glycosylation with synthetic undecaprenyl pyrophosphate-linked oligosaccharide to oligopeptides by PglB oligosaccharyltransferase from Campylobacter jejuni

scientific article published on 16 February 2015

NMR analyses of the conformations of L-isoleucine and L-valine bound to Escherichia coli isoleucyl-tRNA synthetase

scientific article published on 01 October 1987

NMR identification of the Tom20 binding segment in mitochondrial presequences

scientific article published on 01 February 2001

New oligosaccharyltransferase assay method.

scientific article published on 10 August 2007

Nuclear-magnetic-resonance studies of human epidermal growth factor

scientific article published on 01 November 1990

Peptide Library Approach with a Disulfide Tether to Refine the Tom20 Recognition Motif in Mitochondrial Presequences ⬇️

scientific article published on April 25, 2003

Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7

scientific article published on 18 October 2019

Polypeptide chain fold of human transforming growth factor alpha analogous to those of mouse and human epidermal growth factors as studied by two-dimensional 1H NMR

scientific article published on 01 February 1989

Purification, crystallization and preliminary X-ray diffraction studies of the soluble domain of the oligosaccharyltransferase STT3 subunit from the thermophilic archaeon Pyrococcus furiosus.

scientific article published on 31 August 2007

Quantitative assessment of the preferences for the amino acid residues flanking archaeal N-linked glycosylation sites.

scientific article

Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.

scientific article published on 22 December 2015

Ring A of nukacin ISK-1: a lipid II-binding motif for type-A(II) lantibiotic

scientific article published on 17 February 2012

Secondary structural features of modules M2 and M3 of barnase in solution by NMR experiment and distance geometry calculation

scientific article published on 01 August 1993

Selective control of oligosaccharide transfer efficiency for the N-glycosylation sequon by a point mutation in oligosaccharyltransferase.

scientific article published on 28 February 2011

Soft metal ions, Cd(II) and Hg(II), induce triple-stranded alpha-helical assembly and folding of a de novo designed peptide in their trigonal geometries.

scientific article published on July 2000

Solution structure and ligand-binding site of the carboxy-terminal SH3 domain of GRB2

scientific article

Solution structure of the PX domain, a target of the SH3 domain

scientific article

Solution structure of the SH3 domain of phospholipase C-gamma

scientific article

Stalled replication forks: making ends meet for recognition and stabilization.

scientific article published on August 2010

Structural Basis of Protein Asn-Glycosylation by Oligosaccharyltransferases

scientific article published on 01 January 2018

Structural basis for Marburg virus neutralization by a cross-reactive human antibody

scientific article

Structural basis for dynamic interdomain movement and RNA recognition of the selenocysteine-specific elongation factor SelB

scientific article

Structural basis for mRNA recognition by elongation factor SelB

scientific article published on 23 January 2005

Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms

scientific article

Structural basis for recognition of the nonclassical MHC molecule HLA-G by the leukocyte Ig-like receptor B2 (LILRB2/LIR2/ILT4/CD85d)

scholarly article

Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT

scientific article

Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 μ homology domain

scientific journal article

Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Archaeoglobus fulgidus

scientific article published on 3 June 2015

Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Pyrococcus furiosus

scientific article published on 4 February 2014

Structure and activity of JAC1 J-domain implicate the involvement of the cochaperone activity with HSC70 in chloroplast photorelocation movement.

scientific article published on December 2010

Structure of epidermal growth factor bound to perdeuterated dodecylphosphocholine micelles determined by two-dimensional NMR and simulated annealing calculations

scientific article published on 01 January 1992

Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations

scientific article published on December 22, 1992

Structure-guided identification of a new catalytic motif of oligosaccharyltransferase

scientific article

Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.

scientific article published on 20 February 2018

TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P₂

scientific article

Tertiary structure of conotoxin GIIIA in aqueous solution

scientific article published on 01 July 1991

Tertiary structure of mouse epidermal growth factor determined by two-dimensional 1H NMR

scientific article published on 01 May 1988

Tethering an N-Glycosylation Sequon-Containing Peptide Creates a Catalytically Competent Oligosaccharyltransferase Complex.

scientific article

The BALB/c-specific polymorphic SIRPA enhances its affinity for human CD47, inhibiting phagocytosis against human cells to promote xenogeneic engraftment

scientific article published on 20 November 2013

The RecJ2 protein in the thermophilic archaeon Thermoplasma acidophilum is a 3'-5' exonuclease that associates with a DNA replication complex.

scientific article

The archaeal DNA primase: biochemical characterization of the p41-p46 complex from Pyrococcus furiosus.

scientific article published on 02 October 2001

The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states

scientific article published on 25 September 2018

The structure of an archaeal oligosaccharyltransferase provides insight into the strict exclusion of proline from the N-glycosylation sequon

scientific article published on 05 August 2021

Three-dimensional nuclear magnetic resonance structures of mouse epidermal growth factor in acidic and physiological pH solutions

scientific article

Trajectory analysis of NMR structure calculations

scientific article published on 01 June 1995

Trisaccharide containing α2,3-linked sialic acid is a receptor for mumps virus

scientific article

Trypanosoma brucei 14-3-3I and II proteins predominantly form a heterodimer structure that acts as a potent cell cycle regulator in vivo.

scientific article published on March 2013

Uncoupling the hydrolysis of lipid-linked oligosaccharide from the oligosaccharyl transfer reaction by point mutations in yeast oligosaccharyltransferase

scientific article published on 16 September 2020

VHL-box and SOCS-box domains determine binding specificity for Cul2-Rbx1 and Cul5-Rbx2 modules of ubiquitin ligases

scientific article

X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation

scientific article published on 30 October 2017

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