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List of works by Irena Spasić

A GC-TOF-MS study of the stability of serum and urine metabolomes during the UK Biobank sample collection and preparation protocols

scientific article published in April 2008

A computational model of pedestrian road safety: The long way round is the safe way home

scientific article published on 28 June 2018

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

scientific article

A genetic programming approach to development of clinical prediction models: A case study in symptomatic cardiovascular disease

scientific article published in PLoS ONE

A metabolome pipeline: from concept to data to knowledge

article by Marie Brown et al published March 2005 in Metabolomics

A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes

scientific article published on 04 July 2013

A naïve bayes approach to classifying topics in suicide notes

scientific article published on 30 January 2012

A text mining approach to the prediction of disease status from clinical discharge summaries

scientific article published on 23 April 2009

Acceptability of a digital health intervention alongside physiotherapy to support patients following anterior cruciate ligament reconstruction

scientific article published on 21 November 2017

All-Wales Licensed Premises Intervention (AWLPI): a randomised controlled trial of an intervention to reduce alcohol-related violence

scientific article

All-Wales licensed premises intervention (AWLPI): a randomised controlled trial to reduce alcohol-related violence

scientific article (publication date: 10 January 2014)

Automatic Extraction of Personal Experiences from Patients' Blogs: A Case Study in Chronic Obstructive Pulmonary Disease

scholarly article published September 2013

Chapter 15: Search Computing and the Life Sciences

Clinical Text Data in Machine Learning: Systematic Review

scientific article published on 31 March 2020

Cohort Selection for Clinical Trials From Longitudinal Patient Records: Text Mining Approach

scientific article published on 31 October 2019

Creating Welsh Language Word Embeddings

scientific article published on 27 July 2021

Emerging clinical applications of text analytics

scientific article published on 20 September 2019

English–Welsh Cross-Lingual Embeddings

scientific article published on 16 July 2021

External validation of the UKPDS risk engine in incident type 2 diabetes: a need for new type 2 diabetes-specific risk equations

scientific article published on 2 October 2013

Facilitating the development of controlled vocabularies for metabolomics technologies with text mining

scientific article

Feasibility randomised controlled trial comparing TRAK-ACL digital rehabilitation intervention plus treatment as usual versus treatment as usual for patients following anterior cruciate ligament reconstruction

scientific article published on 06 May 2021

FlexiTerm: a flexible term recognition method.

scientific article published on 10 October 2013

Genomes to systems 3

Head to Head: Semantic Similarity of Multi–Word Terms

Integrating self-management support for knee injuries into routine clinical practice: TRAK intervention design and delivery

scientific article published on 08 November 2017

Integrative Information Management for Systems Biology

article

KLOSURE: Closing in on open-ended patient questionnaires with text mining

scientific article published on 12 November 2019

KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways

scientific article published on 31 March 2009

KneeTex: an ontology-driven system for information extraction from MRI reports

scientific article

Leaving No Stone Unturned: Flexible Retrieval of Idiomatic Expressions from a Large Text Corpus

scientific article published in 2021

MaSTerClass: a case-based reasoning system for the classification of biomedical terms

scientific article published on 22 February 2005

MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics

scientific article

Medication information extraction with linguistic pattern matching and semantic rules

scientific article

Metabolic footprinting and systems biology: the medium is the message

scientific article

Metabolomics standards initiative: ontology working group work in progress

Next Steps in Data Capture from Specimen Labels and Data Integration: Lessons learnt from the ICEDIG pilots

scientific article published in 2019

Patient Triage by Topic Modeling of Referral Letters: Feasibility Study

scientific article published on 06 November 2020

Protecting patient privacy in distributed collaborative healthcare environments by retaining access control of shared information

article

SBRML: a markup language for associating systems biology data with models

scientific article

Self-Supervised Representation Learning for Geographical Data—A Systematic Literature Review

scientific article published on 12 February 2023

Sentiment Analysis in Health and Well-Being: Systematic Review

scientific article published on 28 January 2020

Sentinel: A Codesigned Platform for Semantic Enrichment of Social Media Streams

scientific article published on 20 December 2017

Serum metabolomics reveals many novel metabolic markers of heart failure, including pseudouridine and 2-oxoglutarate

article by Warwick Dunn et al published 28 June 2007 in Metabolomics

Systematic integration of experimental data and models in systems biology ⬇️

scientific article (publication date: 29 November 2010)

TRAK App Suite: A Web-Based Intervention for Delivering Standard Care for the Rehabilitation of Knee Conditions

scientific article

TRAK ontology: defining standard care for the rehabilitation of knee conditions

scientific article published on 07 May 2013

Terminology-driven literature mining and knowledge acquisition in biomedicine.

scientific article published on December 2002

Terminology-driven mining of biomedical literature

scientific article published on May 2003

Text Mining of Adverse Events in Clinical Trials: Deep Learning Approach

scientific article published on 24 December 2021

Text mining and ontologies in biomedicine: making sense of raw text

scientific article

Text mining of cancer-related information: review of current status and future directions

scientific article

The Case of Aspect in Sentiment Analysis: Seeking Attention or Co-Dependency?

scientific article published in 2022

The Value of Numbers in Clinical Text Classification

scientific article published on 7 July 2023

The clinical effectiveness of self-care interventions with an exercise component to manage knee conditions: A systematic review

scientific article

Towards a scientific workflow featuring Natural Language Processing for the digitisation of natural history collections

scientific article published on 28 August 2020

Towards a scientific workflow featuring Natural Language Processing for the digitisation of natural history collections

scientific article published on 3 July 2020

Using automatically learnt verb selectional preferences for classification of biomedical terms

scientific article published on December 2004

Using routine referral data for patients with knee and hip pain to improve access to specialist care

scientific article published on 03 February 2020

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