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List of works by Meric Ataman

Analysis of human metabolism by reducing the complexity of the genome-scale models using redHUMAN

scientific article published on 04 June 2020

Author Correction: Analysis of human metabolism by reducing the complexity of the genome-scale models using redHUMAN

scientific article published on 23 July 2020

Bioenergetics-based modeling of Plasmodium falciparum metabolism reveals its essential genes, nutritional requirements, and thermodynamic bottlenecks.

scientific article

Discovery and Evaluation of Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors

scientific article published on 07 August 2018

Exploring biochemical pathways for mono-ethylene glycol (MEG) synthesis from synthesis gas.

scientific article

Heading in the right direction: thermodynamics-based network analysis and pathway engineering

scientific article

Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations

scientific article published on 26 October 2018

MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 March 2020

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Modeling metabolic networks of individual bacterial agents in heterogeneous and dynamic soil habitats (IndiMeSH)

scientific article published on 19 June 2019

Molecular thermodynamics of metabolism: hydration quantities and the equation-of-state approach

scientific article published on 22 November 2016

Molecular thermodynamics of metabolism: quantum thermochemical calculations for key metabolites

scientific article published in April 2015

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 April 2020

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

scientific article (publication date: 4 January 2016)

lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites

scientific article

pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis

scientific article published on 01 January 2019

redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models

scientific article published on 20 July 2017

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