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List of works by Lorenzo Farina

A feature-based integrated scoring scheme for cell cycle-regulated genes prioritization

scientific article published on 24 September 2018

BRAFV600E-mutant cancers display a variety of networks by SWIM analysis: prediction of vemurafenib clinical response

scientific article published on 08 March 2019

Collective behavior in gene regulation: post-transcriptional regulation and the temporal compartmentalization of cellular cycles.

scientific article published on 10 April 2008

Combining optimization and machine learning techniques for genome-wide prediction of human cell cycle-regulated genes.

scientific article published on 18 November 2013

Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer.

scientific article

Dynamic measure of gene co-regulation.

scientific article published in January 2007

Embedding mRNA stability in correlation analysis of time-series gene expression data

scientific article

Essentiality is an emergent property of metabolic network wiring

scientific article published on 02 May 2007

Functional essentiality from topology features in metabolic networks: a case study in yeast

scientific article published on 01 August 2005

Gene expression waves. Cell cycle independent collective dynamics in cultured cells.

scientific article published on 26 April 2007

Integrated network analysis identifies fight-club nodes as a class of hubs encompassing key putative switch genes that induce major transcriptome reprogramming during grapevine development.

scientific article published on 9 December 2014

Kinetics effects and modeling of mRNA turnover.

scientific article

Molecular networks in Network Medicine: Development and applications

scientific article published on 19 April 2020

Network-Based Approaches to Explore Complex Biological Systems towards Network Medicine

article

Networks and circuits in cell regulation.

scientific article published on 10 May 2010

PVT1: a rising star among oncogenic long noncoding RNAs.

scientific article

Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast cancer

scientific article

SWIM: a computational tool to unveiling crucial nodes in complex biological networks

scientific article published on 20 March 2017

Stochastic modeling of expression kinetics identifies messenger half-lives and reveals sequential waves of co-ordinated transcription and decay

scientific article

Synchronous protein cycling in batch cultures of the yeast Saccharomyces cerevisiae at log growth phase.

scientific article published on 24 September 2011

The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program

scientific article published on 4 September 2012

The plasticity of the grapevine berry transcriptome

scientific article published on 07 June 2013

The relation of codon bias to tissue-specific gene expression in Arabidopsis thaliana.

scientific article

mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle

scientific article

miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing

scientific article published on 16 May 2015

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