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List of works by Miles Davenport

A general method to eliminate laboratory induced recombinants during massive, parallel sequencing of cDNA library.

scientific article

A homing selection hypothesis for T-cell trafficking

scientific article

A kinetic model of bone marrow neutrophil production that characterizes late phenotypic maturation.

scientific article published on 21 December 2006

A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing

scientific article published on 7 March 2011

A mechanistic model quantifies artemisinin-induced parasite growth retardation in blood-stage Plasmodium falciparum infection

scientific article published on 17 July 2017

A stochastic model of cytotoxic T cell responses

article

A virus-specific CD8+ T cell immunodominance hierarchy determined by antigen dose and precursor frequencies

scientific article

APOBEC3 has not left an evolutionary footprint on the HIV-1 genome

scientific article

APOBEC3G and APOBEC3F rarely co-mutate the same HIV genome

scientific article

Accurately measuring recombination between closely related HIV-1 genomes

scientific article

Acute neonatal infections 'lock-in' a suboptimal CD8+ T cell repertoire with impaired recall responses

scientific article

An "escape clock" for estimating the turnover of SIV DNA in resting CD4⁺ T cells

scientific article

Analysis of the In Vivo Turnover of CD4+ T-Cell Subsets in Chronically SIV-Infected Sooty Mangabeys

scientific article

Antagonists or altruists: do viral mutants modulate T-cell responses?

scientific article published on September 1995

Anti-HIV-1 ADCC Antibodies following Latency Reversal and Treatment Interruption.

scientific article published on 24 May 2017

Artemisinin-Based Treatments in Pregnant Women with Malaria

scientific article published in July 2016

Benefits of memory

scientific article published on 01 December 2000

Biological determinants of immune reconstitution in HIV-infected patients receiving antiretroviral therapy: the role of interleukin 7 and interleukin 7 receptor α and microbial translocation.

scientific article

Building a T cell compartment: how immune cell development shapes function

scientific article published on 03 June 2020

CD161 defines a transcriptional and functional phenotype across distinct human T cell lineages.

scientific article published on 23 October 2014

CD4 depletion in SIV-infected macaques results in macrophage and microglia infection with rapid turnover of infected cells

scientific article (publication date: October 2014)

CD4+ target cell availability determines the dynamics of immune escape and reversion in vivo

scientific article published on 13 February 2008

CD8+ T cell control of HIV--a known unknown.

scientific article published on 29 January 2010

Cell turnover and cell tropism in HIV-1 infection.

scientific article published on June 2002

Cell-autonomous and environmental contributions to the interstitial migration of T cells.

scientific article published on 10 July 2010

Central memory CD4+ T cells are preferential targets of double infection by HIV-1.

scientific article published on 11 November 2015

Characterising the effect of antimalarial drugs on the maturation and clearance of murine blood-stage Plasmodium parasites in vivo.

scientific article

Clinical assessment of anti-viral CD8+ T cell immune monitoring using QuantiFERON-CMV® assay to identify high risk allogeneic hematopoietic stem cell transplant patients with CMV infection complications

scientific article published on 11 October 2013

Comparative efficacy of subtype AE simian-human immunodeficiency virus priming and boosting vaccines in pigtail macaques.

scientific article published on 18 October 2006

Comparing the kinetics of NK cells, CD4, and CD8 T cells in murine cytomegalovirus infection

scientific article published on 22 June 2011

Complexity of the inoculum determines the rate of reversion of SIV Gag CD8 T cell mutant virus and outcome of infection

scientific article

Consequences of suboptimal priming are apparent for low-avidity T-cell responses

scientific article

Contribution of T cell receptor affinity to overall avidity for virus-specific CD8+ T cell responses

scientific article

Convergent recombination shapes the clonotypic landscape of the naive T-cell repertoire

scientific article

Correction: HIV Reactivation from Latency after Treatment Interruption Occurs on Average Every 5-8 Days-Implications for HIV Remission

scientific article published on 25 August 2016

Cycling memory CD4+ T cells in HIV disease have a diverse T cell receptor repertoire and a phenotype consistent with bystander activation.

scientific article

DNAzyme targeting c-jun suppresses skin cancer growth.

scientific article

Defining the Effectiveness of Antimalarial Chemotherapy: Investigation of the Lag in Parasite Clearance Following Drug Administration

scientific article published on 31 May 2016

Density-dependent blood stage Plasmodium falciparum suppresses malaria super-infection in a malaria holoendemic population

scientific article published on 09 September 2013

Developmental Origin Governs CD8+ T Cell Fate Decisions during Infection

scientific article published on 14 June 2018

Diversity and clonotypic composition of influenza-specific CD8+ TCR repertoires remain unaltered in the absence of Aire.

scientific article published in March 2010

Diversity of the CD8+ T cell repertoire elicited against an immunodominant epitope does not depend on the context of infection

scientific article

Division-linked differentiation can account for CD8+ T-cell phenotype in vivo

scientific article published in January 2009

Does Cytolysis by CD8+ T Cells Drive Immune Escape in HIV Infection?

article

Drug-induced thrombocytopenia: development of a novel NOD/SCID mouse model to evaluate clearance of circulating platelets by drug-dependent antibodies and the efficacy of IVIG.

scientific article

Early establishment of diverse T cell receptor profiles for influenza-specific CD8(+)CD62L(hi) memory T cells

scholarly article

Early priming minimizes the age-related immune compromise of CD8⁺ T cell diversity and function

scientific article (publication date: February 2012)

Effect of mature blood-stage Plasmodium parasite sequestration on pathogen biomass in mathematical and in vivo models of malaria.

scientific article

Effects of antibody on viral kinetics in simian/human immunodeficiency virus infection: implications for vaccination

scientific article published on May 2004

Efficient recall of Omicron-reactive B cell memory after a third dose of SARS-CoV-2 mRNA vaccine

scientific article published on 08 April 2022

Engagement of a T cell receptor by major histocompatibility complex irrespective of peptide

scientific article published on 01 April 1997

Epitope specificity delimits the functional capabilities of vaccine-induced CD8 T cell populations

scientific article

Epitope-specific CD8+ T cell kinetics rather than viral variability determine the timing of immune escape in simian immunodeficiency virus infection

scientific article published on 30 March 2015

Escape from highly effective public CD8+ T-cell clonotypes by HIV

scientific article published on 6 July 2011

Estimating Initial Viral Levels during Simian Immunodeficiency Virus/Human Immunodeficiency Virus Reactivation from Latency

scientific article published on 8 November 2017

Estimating cytomegalovirus growth rates by using only a single point

scientific article published on 9 January 2013

Estimating the contribution of the gut to plasma viral load in early SIV infection

scientific article published on 14 October 2013

Estimating the impact of vaccination on acute simian-human immunodeficiency virus/simian immunodeficiency virus infections

scientific article published on 17 September 2008

Estimating the in-vivo HIV template switching and recombination rate

scientific article published on January 2016

Estimating the infectivity of CCR5-tropic simian immunodeficiency virus SIV(mac251) in the gut.

scientific article

Evolution of the antigen-specific CD8+ TCR repertoire across the life span: evidence for clonal homogenization of the old TCR repertoire

scientific article

Exploration of broadly neutralizing antibody fragments produced in bacteria for the control of HIV.

scientific article published on 26 September 2017

Extraction and characterization of the rhesus macaque T-cell receptor beta-chain genes

scientific article published on 09 June 2009

Fate mapping reveals the age structure of the peripheral T cell compartment

scientific article published on 14 February 2019

Fc functional antibodies in humans with severe H7N9 and seasonal influenza

scientific article published on 6 July 2017

Fifteen to twenty percent of HIV substitution mutations are associated with recombination

scientific article published on 22 January 2014

Footprint of APOBEC3 on the genome of human retroelements

scientific article (publication date: July 2013)

Functional cure of HIV: the scale of the challenge

article

Gammaherpesvirus latency induces antibody-associated thrombocytopenia in mice

scientific article

Genetic and Structural Basis for Selection of a Ubiquitous T Cell Receptor Deployed in Epstein-Barr Virus Infection

scientific article

Genetically-barcoded SIV facilitates enumeration of rebound variants and estimation of reactivation rates in nonhuman primates following interruption of suppressive antiretroviral therapy.

scientific article

HIV Reactivation after Partial Protection by Neutralizing Antibodies.

scientific article published on 20 January 2018

HIV Reactivation from Latency after Treatment Interruption Occurs on Average Every 5-8 Days--Implications for HIV Remission

scientific article published on 2 July 2015

HIV immune escape at an immunodominant epitope in HLA-B*27-positive individuals predicts viral load outcome

scientific article published on 29 November 2010

HIV-1 Mutation and Recombination Rates Are Different in Macrophages and T-cells.

scientific article published on 22 April 2016

HIV-1 variation diminishes CD4 T lymphocyte recognition.

scientific article published on November 1998

High fidelity simian immunodeficiency virus reverse transcriptase mutants have impaired replication in vitro and in vivo

scientific article published on 18 February 2016

High-potency human immunodeficiency virus vaccination leads to delayed and reduced CD8+ T-cell expansion but improved virus control

scientific article

Homogenization of TCR repertoires within secondary CD62Lhigh and CD62Llow virus-specific CD8+ T cell populations

scientific article published in June 2008

Host-mediated impairment of parasite maturation during blood-stage Plasmodium infection.

scientific article published on 3 July 2017

Humoral and circulating follicular helper T cell responses in recovered patients with COVID-19

scientific article published on 13 July 2020

IL-15 promotes activation and expansion of CD8+ T cells in HIV-1 infection.

scientific article published on 20 June 2016

Identifying recombination hot spots in the HIV-1 genome

scientific article published on 26 December 2013

Immunogenetics and transplantation

scientific article

Impact of Plasmodium falciparum Coinfection on Longitudinal Epstein-Barr Virus Kinetics in Kenyan Children

scientific article published on 3 November 2015

In Silico Investigation of the Decline in Clinical Efficacy of Artemisinin Combination Therapies Due to Increasing Artemisinin and Partner Drug Resistance

scientific article published on 26 November 2018

In vivo fitness costs of different Gag CD8 T-cell escape mutant simian-human immunodeficiency viruses for macaques

scientific article published on 7 March 2007

Increased stability and limited proliferation of CD4+ central memory T cells differentiate nonprogressive simian immunodeficiency virus (SIV) infection of sooty mangabeys from progressive SIV infection of rhesus macaques.

scientific article published on 05 February 2014

Infectious diseases: too little, too late for tuberculosis.

scientific article

Influence of peak viral load on the extent of CD4+ T-cell depletion in simian HIV infection

scientific article published on March 2006

Innate immunity induced by Plasmodium liver infection inhibits malaria reinfections

scientific article

Insights into the motif preference of APOBEC3 enzymes

scientific article published on 31 January 2014

Interaction between maternally derived antibodies and heterogeneity in exposure combined to determine time-to-first Plasmodium falciparum infection in Kenyan infants

scientific article published on 22 January 2019

Intracellular dynamics of HIV infection

scientific article

Killer T cells regulate antigen presentation for early expansion of memory, but not naive, CD8+ T cell

scholarly article

Kinetics of virus-specific CD8+ T cells and the control of human immunodeficiency virus infection

scientific article published on September 2004

Lifelong CMV infection improves immune defense in old mice by broadening the mobilized TCR repertoire against third-party infection

article published in the Proceedings of the National Academy of Sciences of the United States of America

Lifelong persistent viral infection alters the naive T cell pool, impairing CD8 T cell immunity in late life

scientific article

Limited CD4+ T cell proliferation leads to preservation of CD4+ T cell counts in SIV-infected sooty mangabeys.

scientific article published on 30 June 2010

Limited maintenance of vaccine-induced simian immunodeficiency virus-specific CD8 T-cell receptor clonotypes after virus challenge

scientific article published on 28 May 2008

Linking pig-tailed macaque major histocompatibility complex class I haplotypes and cytotoxic T lymphocyte escape mutations in simian immunodeficiency virus infection

scientific article

Low levels of SIV infection in sooty mangabey central memory CD⁴⁺ T cells are associated with limited CCR5 expression

scientific article published on 26 June 2011

Low red cell production may protect against severe anemia during a malaria infection--insights from modeling.

scientific article published on 31 December 2008

Measuring immunity to SARS-CoV-2 infection: comparing assays and animal models

scientific article published on 02 November 2020

Measuring turnover of SIV DNA in resting CD4+ T cells using pyrosequencing: implications for the timing of HIV eradication therapies

scientific article

Method for assessing the similarity between subsets of the T cell receptor repertoire

scientific article published on 29 October 2007

Methods for comparing the diversity of samples of the T cell receptor repertoire

scientific article published on 21 February 2007

Mining the mechanisms of an HIV vaccine

scientific article

Modeling of Antilatency Treatment in HIV: What Is the Optimal Duration of Antiretroviral Therapy-Free HIV Remission?

scientific article published on 11 October 2017

Modeling of EBV Infection and Antibody Responses in Kenyan Infants With Different Levels of Malaria Exposure Shows Maternal Antibody Decay is a Major Determinant of Early EBV Infection

scientific article published on 28 August 2016

Modeling of Experimental Data Supports HIV Reactivation from Latency after Treatment Interruption on Average Once Every 5-8 Days

scientific article

Modeling the dynamics of Plasmodium vivax infection and hypnozoite reactivation in vivo

scientific article (publication date: March 2015)

Modeling the dynamics of neonatal CD8+ T-cell responses

scientific article published on 04 May 2016

Modeling the timing of antilatency drug administration during HIV treatment

scientific article published on 24 September 2014

Modelling the impact of antigen kinetics on T-cell activation and response

article

Molecular analysis of HLA class II associations with hepatitis B virus clearance and vaccine nonresponsiveness

scientific article

Molecularly barcoded Zika virus libraries to probe in vivo evolutionary dynamics.

scientific article published on 28 March 2018

NKT and MAIT invariant TCRα sequences can be produced efficiently by VJ gene recombination

scientific article published in May 2012

Naive T cells are maintained by thymic output in early ages but by proliferation without phenotypic change after age twenty

scientific article published in December 2003

Narrowed TCR diversity for immunised mice challenged with recombinant influenza A-HIV Env(311-320) virus

scientific article published on 8 September 2009

Naturally processed peptides from two disease-resistance-associated HLA-DR13 alleles show related sequence motifs and the effects of the dimorphism at position 86 of the HLA-DR beta chain ⬇️

scientific article published on July 3, 1995

Naïve and memory cell turnover as drivers of CCR5-to-CXCR4 tropism switch in human immunodeficiency virus type 1: implications for therapy

scientific article

Nonrandom attrition of the naive CD8+ T-cell pool with aging governed by T-cell receptor:pMHC interactions

scientific article

Novel RNA viruses associated with Plasmodium vivax in human malaria and Leucocytozoon parasites in avian disease

scientific article published on 30 December 2019

P09-08. The complexity of the infecting inoculum determines the outcome of infection.

scientific article published on 22 October 2009

Parasite viability is a superior measure of anti-malarial drug activity in humans

scientific article published on 29 October 2020

Partial efficacy of a broadly neutralizing antibody against cell-associated SHIV infection

scientific article published on August 2017

Persistent survival of prevalent clonotypes within an immunodominant HIV gag-specific CD8+ T cell response.

scientific article published on 6 December 2010

Person-Specific Biomolecular Coronas Modulate Nanoparticle Interactions with Immune Cells in Human Blood

scientific article published on 28 October 2020

Plasmodium-specific antibodies block in vivo parasite growth without clearing infected red blood cells

scientific article published on 27 February 2019

Post transplant CMV-specific T-cell immune reconstitution in the absence of global T-cell immunity is associated with a high risk of subsequent virus reactivation

scientific article published on 17 November 2014

Predicting CD62L expression during the CD8+ T-cell response in vivo

scientific article

Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus

scientific article published on October 2004

Predictors of SIV recrudescence following antiretroviral treatment interruption ⬇️

scientific article published on 25 October 2019

Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection

scientific article published on 06 April 2009

Quantification of host-mediated parasite clearance during blood-stage Plasmodium infection and anti-malarial drug treatment in mice

scientific article published on 01 September 2018

Rapid disease progression and the rate of spread of the HIV epidemic

article

Rapid proliferation and differentiation impairs the development of memory CD8+ T cells in early life.

scientific article

Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost

scientific article

Rates of HIV immune escape and reversion: implications for vaccination

article

Reduced erythrocyte susceptibility and increased host clearance of young parasites slows Plasmodium growth in a murine model of severe malaria.

scientific article published on 06 May 2015

Relationship between Measures of HIV Reactivation and Decline of the Latent Reservoir under Latency-Reversing Agents.

scientific article published on 15 February 2017

Reversion of immune escape HIV variants upon transmission: insights into effective viral immunity

scientific article

Safety and Reproducibility of a Clinical Trial System Using Induced Blood Stage Plasmodium vivax Infection and Its Potential as a Model to Evaluate Malaria Transmission

scientific article

Sequential broadening of CTL responses in early HIV-1 infection is associated with viral escape ⬇️

scientific article

Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination

scholarly article

Simian-human immunodeficiency infection--is the course set in the acute phase?

scientific article

Similarly efficacious anti-malarial drugs SJ733 and pyronaridine differ in their ability to remove circulating parasites in mice

scientific article published on 16 February 2022

Six unrelated HLA-DR-matched adults recognize identical CD4+ T cell epitopes from influenza A haemagglutinin that are not simply peptides with high HLA-DR binding affinities ⬇️

scientific article published on February 1, 1998

Source of CpG Depletion in the HIV-1 Genome.

scientific article published on 28 September 2016

Specificity, promiscuity, and precursor frequency in immunoreceptors.

scientific article published on 20 July 2013

Standard trivalent influenza virus protein vaccination does not prime antibody-dependent cellular cytotoxicity in macaques

scientific article published on 09 October 2013

Stochastic Expansions Maintain the Clonal Stability of CD8+ T Cell Populations Undergoing Memory Inflation Driven by Murine Cytomegalovirus

scientific article published on 09 December 2019

Symptomatic and asymptomatic viral recrudescence in solid-organ transplant recipients and its relationship with the antigen-specific CD8(+) T-cell response

scientific article

Tentative first steps to eradicate latent HIV.

scientific article published on 15 September 2014

Terminal deoxynucleotidyltransferase is required for the establishment of private virus-specific CD8+ TCR repertoires and facilitates optimal CTL responses

scientific article published on August 2008

The Neonatal CD8+ T Cell Repertoire Rapidly Diversifies during Persistent Viral Infection

scientific article published on 13 January 2016

The T cell repertoire in infection and vaccination: implications for control of persistent viruses

scientific article published on 12 April 2007

The dynamics of naturally acquired immunity to Plasmodium falciparum infection

scientific article

The effect of early versus delayed challenge after vaccination in controlling SHIV 89.6P infection

scientific article published on 14 September 2008

The effects of thymic selection on the range of T cell cross-reactivity

scientific article published on December 2005

The molecular basis for public T-cell responses?

scientific article published on March 2008

The origin of genetic diversity in HIV-1.

scientific article published on 21 June 2012

The pigtail macaque MHC class I allele Mane-A*10 presents an immundominant SIV Gag epitope: identification, tetramer development and implications of immune escape and reversion.

scientific article

The promiscuous B27 hypothesis ⬇️

scientific article published on August 19, 1995

The race between infection and immunity: how do pathogens set the pace?

scientific article published on 8 January 2009

The search for an HIV cure: tackling latent infection

scientific article published on 05 March 2013

Time-to-infection by Plasmodium falciparum is largely determined by random factors.

scientific article

Timing of immune escape linked to success or failure of vaccination

scientific article

Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory

scientific article published on 12 October 2020

Trivalent live attenuated influenza-simian immunodeficiency virus vaccines: efficacy and evolution of cytotoxic T lymphocyte escape in macaques

scientific article published on 23 January 2013

Understanding the mechanisms and limitations of immune control of HIV.

scientific article published on April 2007

Use it or lose it: establishment and persistence of T cell memory

scientific article

Vaccination and timing influence SIV immune escape viral dynamics in vivo

scientific article

Vaccination-induced noncytolytic effects in the acute phase of SHIV infection

scientific article

Vaccine-induced T cells control reversion of AIDS virus immune escape mutants

scientific article published on 24 January 2007

Validation of RNA-based molecular clonotype analysis for virus-specific CD8+ T-cells in formaldehyde-fixed specimens isolated from peripheral blood

scientific article

Where have all the parasites gone? Modelling early malaria parasite sequestration dynamics

scientific article published on 18 February 2013

Within-host modeling of blood-stage malaria

scientific article published on 01 September 2018

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