List of works - Dominique Rocha

Allelic variation of the porcine alpha-1,3-galactosyltransferase 1 (GGTA1) gene.

scientific article

An integrative method to normalize RNA-Seq data

scientific article

Analysis of public single nucleotide polymorphisms in commercial pig populations.

scientific article published in October 2005

Bovine TWINKLE and mitochondrial ribosomal protein L43 genes are regulated by an evolutionary conserved bidirectional promoter.

scientific article published on 19 December 2013

Characterization of the porcine FSCN3 gene: cDNA cloning, genomic structure, mapping and polymorphisms.

scientific article published on January 2006

Commercial pigs: an untapped resource for human obesity research?

scientific article published on 01 June 2006

Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology.

scientific article

Construction and validation of a novel dual reporter vector for studying mammalian bidirectional promoters.

scientific article

Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

scientific article

Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2

scientific article

Detection of selection signatures in Limousin cattle using whole-genome resequencing

scientific article published on 20 July 2020

Detection of signatures of selective sweeps in the Blonde d'Aquitaine cattle breed.

scientific article

Differential gene expression in CD3epsilon- and RAG1-deficient thymuses: definition of a set of genes potentially involved in thymocyte maturation.

scientific article published in December 1999

Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones.

scientific article published on September 1995

Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.

scientific article

Genetic characterization of the Blonde d'Aquitaine cattle breed using microsatellite markers and relationship with three other French cattle populations

scientific article published on 12 January 2011

Genetic diversity and selection signatures of the beef 'Charolais de Cuba' breed

scientific article published on 20 July 2018

Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1 gene

scientific article

Genetic variability of the activity of bidirectional promoters: a pilot study in bovine muscle.

scientific article

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.

scientific article published on 28 August 2015

Genome-wide linkage disequilibrium in the Blonde d'Aquitaine cattle breed.

scientific article published on 17 August 2012

HSPD1 is not a major susceptibility gene for rheumatoid arthritis in the French Caucasian population

scientific article published on 11 October 2007

Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

scientific article published on 24 October 2017

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing

scientific article

Identification of the putative ancestral allele of bovine single-nucleotide polymorphisms

scientific article published on 26 May 2014

Mapping of 21 genetic markers to a QTL region for meat quality on pig chromosome 17

scientific article published on 01 June 2006

Mapping of the porcine serine carboxypeptidase vitellogenic-like gene (CPVL) to chromosome 18.

scientific article published in April 2005

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

scientific article published on 19 February 2018

Modulation of mRNA levels in the presence of thymocytes and genome mapping for a set of genes expressed in mouse thymic epithelial cells

scientific article published on 01 January 1997

Molecular cloning, sequencing and expression of the mRNA encoding human Cdx1 and Cdx2 homeobox. Down-regulation of Cdx1 and Cdx2 mRNA expression during colorectal carcinogenesis

scientific article

Multi-breed and multi-trait co-association analysis of meat tenderness and other meat quality traits in three French beef cattle breeds.

scientific article

Novel insights into the bovine polled phenotype and horn ontogenesis in Bovidae

scientific article published in 2013

Pig Longissimus lumborum proteome: Part I. Effects of genetic background, rearing environment and gender.

scientific article published on 4 May 2008

Pig Longissimus lumborum proteome: Part II: Relationships between protein content and meat quality

scientific article published on 07 May 2008

Prospecting for pig single nucleotide polymorphisms in the human genome: have we struck gold?

scientific article published on June 2006

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

scientific article published on 13 September 2017

Seventh international meeting on single nucleotide polymorphism and complex genome analysis: 'ever bigger scans and an increasingly variable genome'.

scientific article

Survey of allele specific expression in bovine muscle

scientific article published on 12 March 2019

Survey of mitochondrial sequences integrated into the bovine nuclear genome

scientific article published on 07 February 2020

Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds

scientific article

Usp9y (ubiquitin-specific protease 9 gene on the Y) is associated with a functional promoter and encodes an intact open reading frame homologous to Usp9x that is under selective constraint.

scientific article published on July 2003

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

scientific article published on 13 July 2014

Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle.

scientific article published on 18 September 2017

List of works by Dominique Rocha

Allelic variation of the porcine alpha-1,3-galactosyltransferase 1 (GGTA1) gene.

An integrative method to normalize RNA-Seq data

Analysis of public single nucleotide polymorphisms in commercial pig populations.

Bovine TWINKLE and mitochondrial ribosomal protein L43 genes are regulated by an evolutionary conserved bidirectional promoter.

Characterization of the porcine FSCN3 gene: cDNA cloning, genomic structure, mapping and polymorphisms.

Commercial pigs: an untapped resource for human obesity research?

Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology.

Construction and validation of a novel dual reporter vector for studying mammalian bidirectional promoters.

Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2

Detection of selection signatures in Limousin cattle using whole-genome resequencing

Detection of signatures of selective sweeps in the Blonde d'Aquitaine cattle breed.

Differential gene expression in CD3epsilon- and RAG1-deficient thymuses: definition of a set of genes potentially involved in thymocyte maturation.

Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones.

Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.

Genetic characterization of the Blonde d'Aquitaine cattle breed using microsatellite markers and relationship with three other French cattle populations

Genetic diversity and selection signatures of the beef 'Charolais de Cuba' breed

Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1 gene

Genetic variability of the activity of bidirectional promoters: a pilot study in bovine muscle.

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.

Genome-wide linkage disequilibrium in the Blonde d'Aquitaine cattle breed.

HSPD1 is not a major susceptibility gene for rheumatoid arthritis in the French Caucasian population

Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing

Identification of the putative ancestral allele of bovine single-nucleotide polymorphisms

Mapping of 21 genetic markers to a QTL region for meat quality on pig chromosome 17

Mapping of the porcine serine carboxypeptidase vitellogenic-like gene (CPVL) to chromosome 18.

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Modulation of mRNA levels in the presence of thymocytes and genome mapping for a set of genes expressed in mouse thymic epithelial cells

Molecular cloning, sequencing and expression of the mRNA encoding human Cdx1 and Cdx2 homeobox. Down-regulation of Cdx1 and Cdx2 mRNA expression during colorectal carcinogenesis

Multi-breed and multi-trait co-association analysis of meat tenderness and other meat quality traits in three French beef cattle breeds.

Novel insights into the bovine polled phenotype and horn ontogenesis in Bovidae

Pig Longissimus lumborum proteome: Part I. Effects of genetic background, rearing environment and gender.

Pig Longissimus lumborum proteome: Part II: Relationships between protein content and meat quality

Prospecting for pig single nucleotide polymorphisms in the human genome: have we struck gold?

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

Seventh international meeting on single nucleotide polymorphism and complex genome analysis: 'ever bigger scans and an increasingly variable genome'.

Survey of allele specific expression in bovine muscle

Survey of mitochondrial sequences integrated into the bovine nuclear genome

Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds

Usp9y (ubiquitin-specific protease 9 gene on the Y) is associated with a functional promoter and encodes an intact open reading frame homologous to Usp9x that is under selective constraint.

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle.