List of works by Pieter Libin

A collaborative environment allowing clinical investigations on integrated biomedical databases

scientific article published on January 2009

A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes

scientific article

A prospect on the use of antiviral drugs to control local outbreaks of COVID-19

scientific article (preprint)

A public HTLV-1 molecular epidemiology database for sequence management and data mining

scientific article

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences

scientific article (publication date: July 2009)

An Evolutionary Model-Based Approach To Quantify the Genetic Barrier to Drug Resistance in Fast-Evolving Viruses and Its Application to HIV-1 Subtypes and Integrase Inhibitors

scientific article published on 25 July 2019

Assessing the feasibility and effectiveness of household-pooled universal testing to control COVID-19 epidemics

scientific article published on 09 March 2021

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools

scientific article published on 7 May 2013

Characterization of Nucleoside Reverse Transcriptase Inhibitor-Associated Mutations in the RNase H Region of HIV-1 Subtype C Infected Individuals.

scientific article published on 8 November 2017

Clinical evaluation of Rega 8: an updated genotypic interpretation system that significantly predicts HIV-therapy response

scientific article

Comparative performance of the REGA subtyping tool version 2 versus version 1.

scientific article published on 12 October 2009

Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time

scientific article

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

scientific article published on 04 November 2020

Development of HTLV-1 Database for data management and datamining HTLV-1 sequences

scientific article published on 6 June 2011

Discordant predictions of residual activity could impact dolutegravir prescription upon raltegravir failure

scientific article published on 29 July 2015

Drivers of HIV-1 transmission: The Portuguese case

scientific article published on 30 September 2019

Efficient Evaluation of Influenza Mitigation Strategies Using Preventive Bandits

Epidemic dispersion of HIV and HCV in a population of co-infected Romanian injecting drug users.

scientific article published on 9 October 2017

Exploring resistance pathways for first-generation NS3/4A protease inhibitors boceprevir and telaprevir using Bayesian network learning

scientific article published on 09 May 2017

Genetic Diversity and Selective Pressure in Hepatitis C Virus Genotypes 1-6: Significance for Direct-Acting Antiviral Treatment and Drug Resistance

scientific article

HCV1b genome evolution under selective pressure of the cyclophilin inhibitor alisporivir during the DEB-025-HCV-203 phase II clinical trial.

scientific article published on 30 June 2016

HIV-1 fitness landscape models for indinavir treatment pressure using observed evolution in longitudinal sequence data are predictive for treatment failure

scientific article

Increasing Prevalence of HIV-1 Transmitted Drug Resistance in Portugal: Implications for First Line Treatment Recommendations

scientific article published on 30 October 2020

Mapping the genomic diversity of HCV subtypes 1a and 1b: Implications of structural and immunological constraints for vaccine and drug development

scientific article published on July 2016

Molecular Epidemiology of HIV-1 Infected Migrants Followed up in Portugal: Trends between 2001-2017

scientific article published on 28 February 2020

Multi-Agent Thompson Sampling for Bandit Applications with Sparse Neighbourhood Structures

scientific article published on 21 April 2020

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context.

scientific article published on 26 August 2017

RegaDB: community-driven data management and analysis for infectious diseases

scientific article

SANTA-SIM: Simulating Viral Sequence Evolution Dynamics Under Selection and Recombination

SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination

scientific article published on 01 January 2019

The impact of HIV-1 within-host evolution on transmission dynamics

scientific article published on 21 December 2017

The impact of HIV-1 within-host evolution on transmission dynamics

article

The rise and fall of K65R in a Portuguese HIV-1 Drug Resistance database, despite continuously increasing use of tenofovir

scientific article published on 6 November 2008

Time to Harmonize Dengue Nomenclature and Classification

scientific article published on 18 October 2018

Treatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients

scientific article

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

scientific article

Zika genomics urgently need standardized and curated reference sequences

scientific article published on 7 September 2017

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