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List of works by Daniel Sindhikara

A 3D-RISM/RISM study of the oseltamivir binding efficiency with the wild-type and resistance-associated mutant forms of the viral influenza B neuraminidase.

scientific article published on 5 June 2015

Apo and nickel-bound forms of the Pyrococcus horikoshii species of the metalloregulatory protein: NikR characterized by molecular dynamics simulations.

scientific article published on December 2009

Bad Seeds Sprout Perilous Dynamics: Stochastic Thermostat Induced Trajectory Synchronization in Biomolecules

scientific article published on 28 April 2009

Cavity as a source of conformational fluctuation and high-energy state: high-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme

scientific article

Determination of the formylglycinamide ribonucleotide amidotransferase ammonia pathway by combining 3D-RISM theory with experiment

scientific article

Exchange Often and Properly in Replica Exchange Molecular Dynamics

scientific article published on 28 July 2010

Exchange frequency in replica exchange molecular dynamics

scientific article published on 01 January 2008

High throughput evaluation of macrocyclization strategies for conformer stabilization.

scientific article published on 26 April 2018

Improving Accuracy, Diversity, and Speed with Prime Macrocycle Conformational Sampling.

scientific article published on 20 July 2017

Placevent: an algorithm for prediction of explicit solvent atom distribution-application to HIV-1 protease and F-ATP synthase.

scientific article published on 20 April 2012

Simple Predictive Models of Passive Membrane Permeability Incorporating Size-Dependent Membrane-Water Partition.

scientific article

Towards an understanding of channelrhodopsin function: simulations lead to novel insights of the channel mechanism.

scientific article published on 30 January 2013