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List of works by Cristiane Calixto

3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

scientific article published on 19 December 2020

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

scientific article

Alternative Splicing of Circadian Clock Genes Correlates With Temperature in Field-Grown Sugarcane

scientific article published on 23 December 2019

AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

scientific article published on 25 June 2015

Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs

scientific article published on 28 February 2019

Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size

scientific article

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.

scientific article

High-Resolution RT-PCR Analysis of Alternative Barley Transcripts

scientific article published on 01 January 2019

High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants

scientific article published on 23 September 2016

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).

scientific article published on 13 March 2018

Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes.

scientific article published in January 2016

Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli.

scientific article

Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome

scientific article published on 15 May 2018

TSIS: an R package to infer alternative splicing isoform switches for time-series data

scientific article published on October 2017

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