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List of works by Xavier Pochon

A comparison of droplet digital polymerase chain reaction (PCR), quantitative PCR and metabarcoding for species-specific detection in environmental DNA

scientific article published on 07 August 2019

A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations

scientific article published in December 2017

A marine dinoflagellate, Amphidinium eilatiensis n. sp., from the benthos of a mariculture sedimentation pond in Eilat, Israel

scientific article published on November 2003

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'i

scientific article

Accurate assessment of the impact of salmon farming on benthic sediment enrichment using foraminiferal metabarcoding

scientific article published on 31 August 2015

Advantages and Limitations of Environmental DNA/RNA Tools for Marine Biosecurity: Management and Surveillance of Non-indigenous Species

scientific article

An Efficient Tetraplex Surveillance Tool for Salmonid Pathogens

scientific article published on 21 April 2022

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region.

scientific article published on 23 May 2018

Assessing the degradation of environmental <scp>DNA</scp> and <scp>RNA</scp> based on genomic origin in a metabarcoding context

scientific article published on 6 June 2023

Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high-throughput sequencing

scientific article published on 22 July 2015

Assessing the performance and efficiency of environmental DNA/RNA capture methodologies under controlled experimental conditions

scientific article published on 12 May 2022

Azooxanthellate? Most Hawaiian black corals contain Symbiodinium

scientific article published on 20 October 2010

Bilge water as a vector for the spread of marine pests: a morphological, metabarcoding and experimental assessment

Biosecurity implications of drifting marine plastic debris: Current knowledge and future research

scientific article published on 18 November 2020

COMPARISON OF ENDOSYMBIOTIC AND FREE-LIVING SYMBIODINIUM (DINOPHYCEAE) DIVERSITY IN A HAWAIIAN REEF ENVIRONMENT1

Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities

scientific article published in Scientific Reports

Comparing sediment DNA extraction methods for assessing organic enrichment associated with marine aquaculture

scientific article published on 27 October 2020

Considerations for incorporating real-time PCR assays into routine marine biosecurity surveillance programmes: a case study targeting the Mediterranean fanworm (Sabella spallanzanii) and club tunicate (Styela clava)

scientific article published on 02 October 2018

Corrigendum: The Coral Trait Database, a curated database of trait information for coral species from the global oceans

scientific article

Depth specialization in mesophotic corals (Leptoseris spp.) and associated algal symbionts in Hawai'i

scientific article

Development of a real-time polymerase chain reaction assay for the detection of the invasive Mediterranean fanworm, Sabella spallanzanii, in environmental samples

scientific article published on 6 June 2017

Dietary Exposure of Pacific Oyster (<i>Crassostrea gigas</i>) Larvae to Compromised Microalgae Results in Impaired Fitness and Microbiome Shift

scientific article published on 24 August 2021

Early detection of eukaryotic communities from marine biofilm using high-throughput sequencing: an assessment of different sampling devices

scientific article published on January 2015

Eco-Plastics in the Sea: Succession of Micro- and Macro-Fouling on a Biodegradable Polymer Augmented With Oyster Shell

scientific article published on 22 June 2022

Effects of temperature and salinity stress on DNA methylation in a highly invasive marine invertebrate, the colonial ascidian Didemnum vexillum. ⬇️

scientific article

Elucidating biodiversity shifts in ballast water tanks during a cross-latitudinal transfer: complementary insights from molecular analyses

scientific article published on 21 May 2020

Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals.

scientific article published on 29 August 2012

Environmental DNA–RNA dynamics provide insights for effective monitoring of marine invasive species

scientific article published in March 2024

Environmental influences on the Indo-Pacific octocoral Isis hippuris Linnaeus 1758 (Alcyonacea: Isididae): genetic fixation or phenotypic plasticity?

scientific article published on 20 August 2015

Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests ⬇️

scientific article

Filter no more: A modified plankton sampler for rapid in‐water <scp>eDNA</scp> capture

scientific article published on 29 November 2023

First evaluation of foraminiferal metabarcoding for monitoring environmental impact from an offshore oil drilling site

scientific article

From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata

scientific article

Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris.

scientific article published on 11 September 2009

GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses

scientific article published on 24 October 2011

Global Trends of Benthic Bacterial Diversity and Community Composition Along Organic Enrichment Gradients of Salmon Farms

scientific article published on 29 April 2021

Harnessing decay rates for coastal marine biosecurity applications: A review of environmental DNA and RNA fate

Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium

scientific article

Incorporating molecular-based functional and co-occurrence network properties into benthic marine impact assessments

scientific article published on 01 November 2018

Linking Environmental DNA and RNA for Improved Detection of the Marine Invasive Fanworm Sabella spallanzanii

scientific article published on 16 October 2019

Maristentor dinoferus n. gen., n. sp., a giant heterotrich ciliate (Spirotrichea: Heterotrichida) with zooxanthellae, from coral reefs on Guam, Mariana Islands ⬇️

scientific article published in 2002

Metabarcoding and metabolomics offer complementarity in deciphering marine eukaryotic biofouling community shifts

scientific article published on 01 July 2018

Metabarcoding as a tool to enhance marine surveillance of nonindigenous species in tropical harbors: A case study in Tahiti

scientific article published on 21 October 2020

Metabarcoding improves detection of eukaryotes from early biofouling communities: implications for pest monitoring and pathway management

scientific article

Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities

scientific article

Molecular delineation of species in the coral holobiont

scientific article

Molecular evidence for host-symbiont specificity in soritid foraminifera

scientific article published on 2 November 2005

Molecular identification of algal endosymbionts in large miliolid Foraminifera: 2. Dinofiagellates

scientific article published in May 2001

Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium

scientific article

Moving environmental DNA (eDNA) technologies from benchtop to the field using passive sampling and PDQeX extraction

scientific article published on 7 September 2022

Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution

scientific article

Multi-gene analysis of the symbiotic and free-living dinoflagellate genus Symbiodinium

Net overboard: comparing marine eDNA sampling methodologies at sea to unravel marine biodiversity

scientific article published on 17 March 2022

Past and Future Grand Challenges in Marine Ecosystem Ecology

scientific article published on 3 June 2020

Persistence and change in community composition of reef corals through present, past, and future climates

scientific article

Release and degradation of environmental DNA and RNA in a marine system

scientific article published on 20 November 2019

Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates

scientific article published on 19 November 2015

The Coral Trait Database, a curated database of trait information for coral species from the global oceans

scientific article

The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress

scientific article

The impact of artificial surfaces on marine bacterial and eukaryotic biofouling assemblages: A high-throughput sequencing analysis

scientific article published on 5 December 2017

The risks of using molecular biodiversity data for incidental detection of species of concern

scientific article published on 13 July 2020

The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.).

scientific article

Towards an in-depth characterization of Symbiodiniaceae in tropical giant clams via metabarcoding of pooled multi-gene amplicons

article

Towards reproducible metabarcoding data: Lessons from an international cross‐laboratory experiment

scientific article published on 31 August 2021

Towards the Optimization of eDNA/eRNA Sampling Technologies for Marine Biosecurity Surveillance

scientific article published on 20 April 2021

Translational Molecular Ecology in practice: Linking DNA-based methods to actionable marine environmental management

scientific article published on 12 July 2020

Trends in DNA barcoding and metabarcoding

scientific article published on 01 March 2019

Trophic state and geographic gradients influence planktonic cyanobacterial diversity and distribution in New Zealand lakes

scientific article

Understanding bacterial communities for informed biosecurity and improved larval survival in Pacific oysters

Understanding the role of DNA methylation in successful biological invasions: a review

Variation in Symbiodinium ITS2 sequence assemblages among coral colonies.

scientific article

Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications

scientific article published on 2 November 2017

Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean

scientific article published on 08 November 2018

Shifts in DNA yield and biological community composition in stored sediment: implications for paleogenomic studies

scientific article published in 2022

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