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List of works by Xavier Pochon

A Portable Cruising Speed Net: Expanding Global Collection of Sea Surface Plankton Data

scientific article published on 23 December 2020

A bacterial index to estimate lake trophic level: National scale validation

scientific article published in March 2022

A comparison of droplet digital polymerase chain reaction (PCR), quantitative PCR and metabarcoding for species-specific detection in environmental DNA

scientific article published on 07 August 2019

A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations

scientific article published in December 2017

A marine dinoflagellate, Amphidinium eilatiensis n. sp., from the benthos of a mariculture sedimentation pond in Eilat, Israel

scientific article published on November 2003

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'i

scientific article

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i

journal article from 'Molecular phylogenetics and evolution' published in 2010

Accurate assessment of the impact of salmon farming on benthic sediment enrichment using foraminiferal metabarcoding

scientific article published on 31 August 2015

Advantages and Limitations of Environmental DNA/RNA Tools for Marine Biosecurity: Management and Surveillance of Non-indigenous Species

scientific article

An Efficient Tetraplex Surveillance Tool for Salmonid Pathogens

scientific article published on 21 April 2022

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region.

scientific article published on 23 May 2018

An investigation into the stability and degradation of plastics in aquatic environments using a large-scale field-deployment study

scholarly article

Assessing the degradation of environmental <scp>DNA</scp> and <scp>RNA</scp> based on genomic origin in a metabarcoding context

scientific article published on 6 June 2023

Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high-throughput sequencing

scientific article published on 22 July 2015

Assessing the performance and efficiency of environmental DNA/RNA capture methodologies under controlled experimental conditions

scientific article published on 12 May 2022

Author Correction: Epigenetic patterns associated with an ascidian invasion: a comparison of closely related clades in their native and introduced ranges ⬇️

scientific article published on 13 December 2019

Azooxanthellate? Most Hawaiian black corals contain Symbiodinium

scientific article published on 20 October 2010

Bilge water as a vector for the spread of marine pests: a morphological, metabarcoding and experimental assessment

Biosecurity implications of drifting marine plastic debris: Current knowledge and future research

scientific article published on 18 November 2020

COMPARISON OF ENDOSYMBIOTIC AND FREE-LIVING SYMBIODINIUM (DINOPHYCEAE) DIVERSITY IN A HAWAIIAN REEF ENVIRONMENT1

CRISPR-Cas-Based Biomonitoring for Marine Environments: Toward CRISPR RNA Design Optimization Via Deep Learning

scientific article published in August 2023

Cladophora ruchingeri (C.Agardh) Kützing, 1845 (Cladophorales, Chlorophyta): a new biofouling pest of green-lipped mussel Perna canaliculus (Gmelin, 1791) farms in New Zealand

scientific article published in 2015

Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities

scientific article published in Scientific Reports

Comparing sediment DNA extraction methods for assessing organic enrichment associated with marine aquaculture

scientific article published on 27 October 2020

Considerations for incorporating real-time PCR assays into routine marine biosecurity surveillance programmes: a case study targeting the Mediterranean fanworm (Sabella spallanzanii) and club tunicate (Styela clava)

scientific article published on 02 October 2018

Corrigendum: The Coral Trait Database, a curated database of trait information for coral species from the global oceans

scientific article

Cryopreservation of six Symbiodiniaceae genera and assessment of fatty acid profiles in response to increased salinity treatments

scientific article published in 2022

Depth specialization in mesophotic corals (Leptoseris spp.) and associated algal symbionts in Hawai'i

scientific article

Development and preliminary validation of a multi-trophic metabarcoding biotic index for monitoring benthic organic enrichment

article

Development of a quantitative PCR–high-resolution melting assay for absolute measurement of coral-Symbiodiniaceae associations and its application to investigating variability at three spatial scales

scholarly article

Development of a real-time polymerase chain reaction assay for the detection of the invasive Mediterranean fanworm, Sabella spallanzanii, in environmental samples

scientific article published on 6 June 2017

Development of droplet digital Polymerase Chain Reaction assays for the detection of long-finned (<i>Anguilla dieffenbachii</i>) and short-finned (<i>Anguilla australis</i>) eels in environmental samples

scientific article published on 27 September 2021

Dietary Exposure of Pacific Oyster (<i>Crassostrea gigas</i>) Larvae to Compromised Microalgae Results in Impaired Fitness and Microbiome Shift

scientific article published on 24 August 2021

Differential effects of coral-giant clam assemblages on biofouling formation

scientific article published on 25 February 2019

Dimethylsulfoniopropionate concentration in coral reef invertebrates varies according to species assemblages

scientific article published on 18 June 2020

Drop it all: Extraction-free detection of non-indigenous marine species through optimized direct-droplet digital PCR

scientific article published on 22 July 2023

Drop it all: extraction-free detection of targeted marine species through optimized direct droplet digital PCR

scientific article published in 2024

Early detection of eukaryotic communities from marine biofilm using high-throughput sequencing: an assessment of different sampling devices

scientific article published on January 2015

Eco-Plastics in the Sea: Succession of Micro- and Macro-Fouling on a Biodegradable Polymer Augmented With Oyster Shell

scientific article published on 22 June 2022

Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

scientific article published on 16 May 2020

Effects of temperature and salinity stress on DNA methylation in a highly invasive marine invertebrate, the colonial ascidian Didemnum vexillum. ⬇️

scientific article

Elucidating biodiversity shifts in ballast water tanks during a cross-latitudinal transfer: complementary insights from molecular analyses

scientific article published on 21 May 2020

Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals.

scientific article published on 29 August 2012

Environmental DNA–RNA dynamics provide insights for effective monitoring of marine invasive species

scientific article published in March 2024

Environmental influences on the Indo-Pacific octocoral Isis hippuris Linnaeus 1758 (Alcyonacea: Isididae): genetic fixation or phenotypic plasticity?

scientific article published on 20 August 2015

Epigenetic patterns associated with an ascidian invasion: a comparison of closely related clades in their native and introduced ranges ⬇️

scientific article published on 03 October 2019

Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests ⬇️

scientific article

Filter no more: A modified plankton sampler for rapid in‐water <scp>eDNA</scp> capture

scientific article published on 29 November 2023

First evaluation of foraminiferal metabarcoding for monitoring environmental impact from an offshore oil drilling site

scientific article

From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata

scientific article

Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris.

scientific article published on 11 September 2009

GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses

scientific article published on 24 October 2011

Global Trends of Benthic Bacterial Diversity and Community Composition Along Organic Enrichment Gradients of Salmon Farms

scientific article published on 29 April 2021

Harnessing decay rates for coastal marine biosecurity applications: A review of environmental DNA and RNA fate

Harnessing environmental DNA to reveal biogeographical patterns of non-indigenous species for improved co-governance of the marine environment in Aotearoa New Zealand

scientific article published on 10 October 2023

Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium

scientific article

Incorporating molecular-based functional and co-occurrence network properties into benthic marine impact assessments

scientific article published on 01 November 2018

Lake microbial communities are not resistant or resilient to repeated large‐scale natural pulse disturbances

scientific article published in 2021

Linking Environmental DNA and RNA for Improved Detection of the Marine Invasive Fanworm Sabella spallanzanii

scientific article published on 16 October 2019

Local factors drive bacterial and microeukaryotic community composition in lake surface sediment collected across an altitudinal gradient

scientific article published on 20 April 2020

Maristentor dinoferus n. gen., n. sp., a giant heterotrich ciliate (Spirotrichea: Heterotrichida) with zooxanthellae, from coral reefs on Guam, Mariana Islands ⬇️

scientific article published in 2002

Metabarcoding and metabolomics offer complementarity in deciphering marine eukaryotic biofouling community shifts

scientific article published on 01 July 2018

Metabarcoding as a tool to enhance marine surveillance of nonindigenous species in tropical harbors: A case study in Tahiti

scientific article published on 21 October 2020

Metabarcoding improves detection of eukaryotes from early biofouling communities: implications for pest monitoring and pathway management

scientific article

Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities

scientific article

Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima

scientific article published on 21 April 2020

Miliolidium n. gen, a New Symbiodiniacean Genus Whose Members Associate with Soritid Foraminifera or Are Free‐Living ⬇️

scientific article published on 8 June 2021

Mixed-habitat assimilation of organic waste in coastal environments - It's all about synergy!

scientific article published on 06 September 2019

Molecular delineation of species in the coral holobiont

scientific article

Molecular evidence for host-symbiont specificity in soritid foraminifera

scientific article published on 2 November 2005

Molecular identification of algal endosymbionts in large miliolid Foraminifera: 2. Dinofiagellates

scientific article published in May 2001

Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium

scientific article

Moving environmental DNA (eDNA) technologies from benchtop to the field using passive sampling and PDQeX extraction

scientific article published on 7 September 2022

Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution

scientific article

Multi-gene analysis of the symbiotic and free-living dinoflagellate genus Symbiodinium

Net overboard: Comparing marine <scp>eDNA</scp> sampling methodologies at sea to unravel marine biodiversity

scientific article published on 27 October 2022

Net overboard: comparing marine eDNA sampling methodologies at sea to unravel marine biodiversity

scientific article published on 17 March 2022

Past and Future Grand Challenges in Marine Ecosystem Ecology

scientific article published on 3 June 2020

Performance and cost-efficiency of eDNA and eRNA capture methodologies: experimental assessment using cultured microalgae

scientific article published on 15 March 2021

Persistence and change in community composition of reef corals through present, past, and future climates

scientific article

RPA-based point-of-need detection assay for the invasive Mediterranean fanworm Sabella spallanzanii

scientific article published on 4 March 2021

Recent invader or indicator of environmental change? A phylogenetic and ecological study of Cylindrospermopsis raciborskii in New Zealand

article

Release and degradation of environmental DNA and RNA in a marine system

scientific article published on 20 November 2019

Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates

scientific article published on 19 November 2015

The Coral Trait Database, a curated database of trait information for coral species from the global oceans

scientific article

The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress

scientific article

The effects of substratum type on the growth, mortality, and photophysiology of juvenile corals in St. John, US Virgin Islands

scientific article published on 09 January 2010

The impact of artificial surfaces on marine bacterial and eukaryotic biofouling assemblages: A high-throughput sequencing analysis

scientific article published on 5 December 2017

The risks of using molecular biodiversity data for incidental detection of species of concern

scientific article published on 13 July 2020

The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.).

scientific article

Towards an in-depth characterization of Symbiodiniaceae in tropical giant clams via metabarcoding of pooled multi-gene amplicons

article

Towards an in-depth characterization of Symbiodiniaceae in tropical giant clams via metabarcoding of pooled multi-gene amplicons

scientific article published on 13 May 2019

Towards reproducible metabarcoding data: Lessons from an international cross‐laboratory experiment

scientific article published on 31 August 2021

Towards the Optimization of eDNA/eRNA Sampling Technologies for Marine Biosecurity Surveillance

scientific article published on 20 April 2021

Translational Molecular Ecology in practice: Linking DNA-based methods to actionable marine environmental management

scientific article published on 12 July 2020

Trends in DNA barcoding and metabarcoding

scientific article published on 01 March 2019

Trophic state and geographic gradients influence planktonic cyanobacterial diversity and distribution in New Zealand lakes

scientific article

Understanding bacterial communities for informed biosecurity and improved larval survival in Pacific oysters

Understanding the role of DNA methylation in successful biological invasions: a review

Unique quantitative Symbiodiniaceae signature of coral colonies revealed through spatio-temporal survey in Moorea

scientific article published on 28 May 2019

Variation in Symbiodinium ITS2 sequence assemblages among coral colonies.

scientific article

Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications

scientific article published on 2 November 2017

Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean

scientific article published on 08 November 2018

eDNA metabarcoding shows latitudinal eukaryote micro- and mesoplankton diversity stabilizes across oligotrophic region of a >3000 km longitudinal transect in the Indian Ocean

scientific article published in 2022

Shifts in DNA yield and biological community composition in stored sediment: implications for paleogenomic studies

scientific article published in 2022

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