List of works - Jun Li

A novel intraperitoneal metastatic xenograft mouse model for survival outcome assessment of esophageal adenocarcinoma

scientific article

A sparse differential clustering algorithm for tracing cell type changes via single-cell RNA-sequencing data.

scientific article published on 13 November 2017

A transcriptomic survey of the impact of environmental stress on response to dengue virus in the mosquito, Aedes aegypti.

scientific article

Aggressive breast cancer in western Kenya has early onset, high proliferation, and immune cell infiltration

scientific article

Caspase-3 suppresses diethylnitrosamine-induced hepatocyte death, compensatory proliferation and hepatocarcinogenesis through inhibiting p38 activation.

scientific article

Detection of Test Speededness Using Change-Point Analysis

scientific article published on 25 August 2015

DiPhiSeq: robust comparison of expression levels on RNA-Seq data with large sample sizes

scientific article published on 01 July 2019

Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data ⬇️

scientific article published on November 28, 2011

GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison.

scientific article published on 2 November 2017

Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data.

scientific article

LEAP: constructing gene co-expression networks for single-cell RNA-sequencing data using pseudotime ordering.

scientific article

Metabolomics of oncogene-specific metabolic reprogramming during breast cancer.

scientific article published on 3 April 2018

Modeling non-uniformity in short-read rates in RNA-Seq data

scientific article

Normalization, testing, and false discovery rate estimation for RNA-sequencing data ⬇️

scientific article published on October 14, 2011

Notch-1-PTEN-ERK1/2 signaling axis promotes HER2+ breast cancer cell proliferation and stem cell survival

scientific article published on 10 May 2018

SCIBER: a simple method for removing batch effects from single-cell RNA-sequencing data

scientific article published on 22 December 2022

Superior Therapeutic Efficacy of Nanoparticle Albumin Bound Paclitaxel Over Cremophor-Bound Paclitaxel in Experimental Esophageal Adenocarcinoma.

scientific article published on 20 February 2018

Untargeted Tumor Metabolomics with Liquid Chromatography-Surface-Enhanced Raman Spectroscopy

scientific article published on 27 January 2020

Variable selection with false discovery rate control in deep neural networks

scientific article published on 29 March 2021

Widespread position-specific conservation of synonymous rare codons within coding sequences.

scientific article

scSorter: assigning cells to known cell types according to marker genes

scientific article published on 22 February 2021

ulfasQTL: an ultra-fast method of composite splicing QTL analysis.

scientific article

List of works by Jun Li

A novel intraperitoneal metastatic xenograft mouse model for survival outcome assessment of esophageal adenocarcinoma

A sparse differential clustering algorithm for tracing cell type changes via single-cell RNA-sequencing data.

A transcriptomic survey of the impact of environmental stress on response to dengue virus in the mosquito, Aedes aegypti.

Aggressive breast cancer in western Kenya has early onset, high proliferation, and immune cell infiltration

Caspase-3 suppresses diethylnitrosamine-induced hepatocyte death, compensatory proliferation and hepatocarcinogenesis through inhibiting p38 activation.

Detection of Test Speededness Using Change-Point Analysis

DiPhiSeq: robust comparison of expression levels on RNA-Seq data with large sample sizes

Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data ⬇️

GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison.

Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data.

LEAP: constructing gene co-expression networks for single-cell RNA-sequencing data using pseudotime ordering.

Metabolomics of oncogene-specific metabolic reprogramming during breast cancer.

Modeling non-uniformity in short-read rates in RNA-Seq data

Normalization, testing, and false discovery rate estimation for RNA-sequencing data ⬇️

Notch-1-PTEN-ERK1/2 signaling axis promotes HER2+ breast cancer cell proliferation and stem cell survival

SCIBER: a simple method for removing batch effects from single-cell RNA-sequencing data

Superior Therapeutic Efficacy of Nanoparticle Albumin Bound Paclitaxel Over Cremophor-Bound Paclitaxel in Experimental Esophageal Adenocarcinoma.

Untargeted Tumor Metabolomics with Liquid Chromatography-Surface-Enhanced Raman Spectroscopy

Variable selection with false discovery rate control in deep neural networks

Widespread position-specific conservation of synonymous rare codons within coding sequences.

scSorter: assigning cells to known cell types according to marker genes

ulfasQTL: an ultra-fast method of composite splicing QTL analysis.