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List of works by Stefano de Pretis

Computational and experimental methods to decipher the epigenetic code

scientific article

DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes.

scientific article

Degradation dynamics of microRNAs revealed by a novel pulse-chase approach.

scientific article published on 28 January 2016

INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments.

scientific article published on 7 May 2015

Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions

scientific article

Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation.

scientific article published on 13 September 2017

Integrative classification of human coding and noncoding genes through RNA metabolism profiles

scientific article

LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer

scientific article published on 9 February 2016

Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.

scientific article

Selective transcriptional regulation by Myc: Experimental design and computational analysis of high-throughput sequencing data

scientific article

Transcription of Mammalian cis-Regulatory Elements Is Restrained by Actively Enforced Early Termination.

scientific article published on 22 October 2015

m6A-Dependent RNA Dynamics in T Cell Differentiation

article

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

scientific article

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