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List of works by Kei-Ichi Okazaki

CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work

scientific article published on 19 May 2011

Curvature induction and sensing of the F-BAR protein Pacsin1 on lipid membranes via molecular dynamics simulations

scientific article published on 10 October 2019

Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms

scholarly article

Elasticity, friction, and pathway of γ-subunit rotation in FoF1-ATP synthase

scientific article

F1-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements

scientific article

Ion Binding and Selectivity of the Na+/H+ Antiporter MjNhaP1 from Experiment and Simulation

scientific article published on 02 January 2020

Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide

scientific article published on 01 August 2020

Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting

scientific article published on 15 April 2019

Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

scientific article

Phosphate release coupled to rotary motion of F1-ATPase

scientific article

Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin

scientific article published in Nature Communications

Structural comparison of F1-ATPase: interplay among enzyme structures, catalysis, and rotations.

scientific article

Temperature-enhanced association of proteins due to electrostatic interaction: a coarse-grained simulation of actin-myosin binding.

scientific article

Transition path sampling of rare events by shooting from the top.

scientific article published in October 2017

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