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List of works by Carson M Andorf

A pan-genomic approach to genome databases using maize as a model system

scientific article published on 20 August 2021

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

article

Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize

scientific article published on 25 February 2022

Association mapping across a multitude of traits collected in diverse environments in maize

scientific article published in 2022

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes

scientific article published on 10 November 2014

Choosing a genome browser for a Model Organism Database: surveying the maize community.

scientific article

Co-expression pan-network reveals genes involved in complex traits within maize pan-genome

scientific article published in 2022

Crowdsourcing Image Analysis for Plant Phenomics to Generate Ground Truth Data for Machine Learning

article

Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning

article

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach

scientific article (publication date: 2007)

FASSO: An AlphaFold based method to assign functional annotations by combining sequence and structure orthology

FINDER: An automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

scientific article published on 20 April 2021

G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation

scientific article published on 4 November 2014

GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations

scientific article published on 02 March 2020

Haplotype structure in commercial maize breeding programs in relation to key founder lines

scientific article published on 20 November 2019

Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources

Information Integration from Semantically Heterogeneous Biological Data Sources

article published in 2005

Maize GO Annotation - Methods, Evaluation, and Review (maize-GAMER)

Maize GO Annotation-Methods, Evaluation, and Review (maize-GAMER)

scientific article published on 11 April 2018

MaizeDIG: Maize Database of Images and Genomes

scientific article published on 28 August 2019

MaizeGDB , maize genetics cooperation and the ~2500MB B73 genome generated tsunami

scientific article

MaizeGDB , maize genetics cooperation and the ~2500MB B73 genome generated tsunami

MaizeGDB 2018: the maize multi-genome genetics and genomics database

article

MaizeGDB becomes 'sequence-centric'

scientific article

MaizeGDB update: new tools, data and interface for the maize model organism database

scientific article

MaizeGDB: The Maize Genetics and Genomics Database.

scientific article published on January 2016

MaizeGDB: curation and outreach go hand-in-hand ⬇️

scientific article

MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database

scientific article published on 22 October 2020

POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data

scientific article

PanEffect: a pan-genome visualization tool for variant effects in maize

scientific article published in 2024

PedigreeNet: a web-based pedigree viewer for biological databases

scientific article published on 01 October 2019

Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach

scientific article published on 01 January 2022

Predicting the Binding Patterns of Hub Proteins: A Study Using Yeast Protein Interaction Networks ⬇️

scientific article published on February 19, 2013

SNPversity: a web-based tool for visualizing diversity.

scientific article published in January 2018

Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation.

scientific article

Technological advances in maize breeding: past, present and future

scientific article published on 23 February 2019

The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps

scientific article published in February 2010

The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video

scientific article

The maize W22 genome provides a foundation for functional genomics and transposon biology

scientific article published on 30 July 2018

Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

scientific article published on 03 January 2020

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