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List of works by Giovanni Parmigiani

A Bayesian model for cross-study differential gene expression

scientific article

A decision-theory approach to interpretable set analysis for high-dimensional data

scientific article

Accounting for uncertainty in confounder and effect modifier selection when estimating average causal effects in generalized linear models

scientific article published on 20 April 2015

Accuracy of MSI testing in predicting germline mutations of MSH2 and MLH1: a case study in Bayesian meta-analysis of diagnostic tests without a gold standard

scientific article published on 14 April 2005

BayesMendel: an R environment for Mendelian risk prediction

scientific article published on 17 September 2004

Bayesian Effect Estimation Accounting for Adjustment Uncertainty ⬇️

scientific article published on February 24, 2012

Bayesian nonparametric cross-study validation of prediction methods ⬇️

Calibrated predictions for multivariate competing risks models

scientific article published on 31 May 2013

Classification of Missense Mutations of Disease Genes

scientific article

Clinical Factors Associated With Gastric Cancer in Individuals With Lynch Syndrome

scientific article published on 15 July 2019

ComBat-seq: batch effect adjustment for RNA-seq count data

scientific article published on 21 September 2020

Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma

Consensus on Molecular Subtypes of Ovarian Cancer

Cross-Calibration of Stroke Disability Measures

Cross-study validation and combined analysis of gene expression microarray data

scientific article

Family History of Breast or Prostate Cancer and Prostate Cancer Risk

scientific article published on 06 August 2018

Frailty Models for Familial Risk with Application to Breast Cancer

scientific article published on December 2013

Gene Expression Pathways in Prostate Tissue Associated with Vigorous Physical Activity in Prostate Cancer

scientific article published on 26 January 2021

Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays

scientific article published on June 2008

High-Dimensional Confounding Adjustment Using Continuous Spike and Slab Priors

scientific article published on 11 June 2019

Influenza Vaccination and COVID19 Mortality in the USA

scientific article published on 26 June 2020

Integrative correlation: Properties and relation to canonical correlations

scientific article

Integrative factor analysis - An unsupervised method for quantifying cross-study consistency of gene expression data

scientific article published on 4 September 2017

MODELING DEPENDENT GENE EXPRESSION

scientific article published on 11 June 2012

MergeMaid: R tools for merging and cross-study validation of gene expression data

scientific article

Model averaged double robust estimation

scientific article

Modeling and optimization in early detection programs with a single exam

scientific article

Modeling liquid association

scientific article

Multi-omic analysis of subtype evolution and heterogeneity in high-grade serous ovarian carcinoma

scientific article published on 03 August 2020

Multi-study Factor Analysis

scientific article published on 08 March 2019

Multiplex immunofluorescence in formalin-fixed paraffin-embedded tumor tissue to identify single cell-level PI3K pathway activation

scientific article published on 10 September 2020

Nonparametric Adjustment for Measurement Error in Time-to-Event Data: Application to Risk Prediction Models

scientific article published on 14 September 2017

Optimal Bayesian adaptive trials when treatment efficacy depends on biomarkers

scientific article published on 17 November 2015

Pathological complete response after neoadjuvant chemotherapy and impact on breast cancer recurrence and survival: a comprehensive meta-analysis

scientific article published on 11 February 2020

Penetrance of Breast and Ovarian Cancer in Women Who Carry a BRCA1/2 Mutation and Do Not Use Risk-Reducing Salpingo-Oophorectomy: An Updated Meta-Analysis

scientific article published on 23 April 2020

Penetrance of Colorectal Cancer Among Mismatch Repair Gene Mutation Carriers: A Meta-Analysis

scientific article published on 23 April 2020

Practical implementation of frailty models in Mendelian risk prediction

scientific article published on 07 June 2020

Precision Prevention and Early Detection of Cancer: Fundamental Principles

scientific article published on 15 June 2018

Prediction of hereditary cancers using neural networks

scientific article published on 29 March 2022

Rejoinder.

scientific article

TRAB: testing whether mutation frequencies are above an unknown background

scientific article

The Impact of Stroma Admixture on Molecular Subtypes and Prognostic Gene Signatures in Serous Ovarian Cancer

scientific article published on 23 December 2019

The impact of stroma on the discovery of molecular subtypes and prognostic gene signatures in serous ovarian cancer:

article

Training replicable predictors in multiple studies.

scientific article published on 12 March 2018

Variation in cancer risk among families with genetic susceptibility

scientific article published on 08 October 2020

When should one subtract background fluorescence in 2-color microarrays?

scientific article published on 12 December 2006

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