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List of works by Alexander Goncearenco

A Dominant Negative Heterozygous G87R Mutation in the Zinc Transporter, ZnT-2 (SLC30A2), Results in Transient Neonatal Zinc Deficiency ⬇️

scientific article published on June 25, 2012

APOBEC Mutagenesis and Copy-Number Alterations Are Drivers of Proteogenomic Tumor Evolution and Heterogeneity in Metastatic Thoracic Tumors

scientific article published on 01 March 2019

Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers

scientific article

Annotating Mutational Effects on Proteins and Protein Interactions: Designing Novel and Revisiting Existing Protocols

scientific article published on January 2017

Computational Approaches to Prioritize Cancer Driver Missense Mutations

scientific article published on 20 July 2018

Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins

scientific article published on 30 June 2011

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions

scientific article published on 14 December 2015

Coverage of protein domain families with structural protein-protein interactions: current progress and future trends.

scientific article

Exploring Protein-Protein Interactions as Drug Targets for Anti-cancer Therapy with In Silico Workflows.

scientific article published on January 2017

Exploring background mutational processes to decipher cancer genetic heterogeneity.

scientific article published on 4 May 2017

Exploring the evolution of protein function in Archaea

scientific article

Finding driver mutations in cancer: Elucidating the role of background mutational processes

scientific article published on 29 April 2019

Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012.

scientific article

Homology modeling of a voltage-gated potassium channel (human Kv7.1).

scientific article published on 20 November 2007

MethylToSNP: identifying SNPs in Illumina DNA methylation array data

scientific article published on 20 December 2019

Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins.

scientific article published on 25 December 2013

Molecular recognition of nucleosomes by binding partners

scientific article published on 13 April 2019

MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions

scientific article published on 05 May 2016

Mutational signatures and mutable motifs in cancer genomes.

scientific article

Nucleotide binding database NBDB--a collection of sequence motifs with specific protein-ligand interactions

scientific article published on 26 October 2015

Protein function from its emergence to diversity in contemporary proteins.

scientific article

Prototypes of elementary functional loops unravel evolutionary connections between protein functions ⬇️

scientific article published on September 15, 2010

SPACER: Server for predicting allosteric communication and effects of regulation.

scientific article published on 03 June 2013

Simple yet functional phosphate-loop proteins

scientific article published on 30 November 2018

Structural Perspectives on the Evolutionary Expansion of Unique Protein-Protein Binding Sites.

scientific article

The fundamental tradeoff in genomes and proteomes of prokaryotes established by the genetic code, codon entropy, and physics of nucleic acids and proteins

scientific article

Thermophilic adaptation of protein complexes inferred from proteomic homology modeling.

scientific article published in July 2010

Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles.

scientific article published on 6 May 2016

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