List of works - Sara Mostafavi

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

scientific article

Allele-specific expression reveals interactions between genetic variation and environment

scientific article published on 22 May 2017

Allele-specific expression reveals interactions between genetic variation and environment

Association of Whole-Genome and NETRIN1 Signaling Pathway–Derived Polygenic Risk Scores for Major Depressive Disorder and White Matter Microstructure in the UK Biobank

scholarly article by Miruna C. Barbu et al published July 2018 in Biological Psychiatry: Cognitive Neuroscience and Neuroimaging

Biologically relevant transfer learning improves transcription factor binding prediction

scientific article published on 27 September 2021

CD56bright natural killer regulatory cells in filgrastim primed donor blood or marrow products regulate chronic graft-versus-host disease: the Canadian Blood and Marrow Transplant Group randomized 0601 study results

scientific article published on 21 September 2017

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

scientific article

Classical Human Leukocyte Antigen Alleles and C4 Haplotypes Are Not Significantly Associated With Depression

scientific article published on 05 August 2019

Combining many interaction networks to predict gene function and analyze gene lists ⬇️

scientific article published on May 1, 2012

Contributions of steroidogenic factor 1 to the transcription landscape of Y1 mouse adrenocortical tumor cells

scientific article

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression

scientific article published on 17 August 2020

Differences in DNA methylation of white blood cell types at birth and in adulthood reflect postnatal immune maturation and influence accuracy of cell type prediction

EIF3G is associated with narcolepsy across ethnicities

scientific article

Fast integration of heterogeneous data sources for predicting gene function with limited annotation

scientific article

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

scientific article

Genetic studies of major depressive disorder: why are there no genome-wide association study findings and what can we do about it?

scientific article published on October 2014

Genetic variants in Alzheimer disease - molecular and brain network approaches

scientific article

Genetic variation in the Major Histocompatibility Complex and association with depression

Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

scientific article published on 26 April 2018

Impact of the X Chromosome and sex on regulatory variation

scientific article published on 21 April 2016

Increased transcriptional activity of milk-related genes following the active phase of experimental autoimmune encephalomyelitis and multiple sclerosis

scientific article published in September 2007

Inhalation of diesel exhaust and allergen alters human bronchial epithelium DNA methylation

scientific article published on 10 May 2016

Integration of genomics and metabolomics for prioritization of rare disease variants: a 2018 literature review. ⬇️

scientific article published on 2 May 2018

Labeling nodes using three degrees of propagation

scientific article

Multi-omic Directed Networks Describe Features of Gene Regulation in Aged Brains and Expand the Set of Genes Driving Cognitive Decline

article

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation

scientific article published on 11 December 2017

Network pharmacology of JAK inhibitors

scientific article published on 11 August 2016

Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge

scientific article

Parsing the Interferon Transcriptional Network and Its Disease Associations

scientific article published on January 2016

Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes

scientific article published on May 2014

Predicting node characteristics from molecular networks

scientific article published in January 2011

Predictive modeling of therapy response in multiple sclerosis using gene expression data

scientific article

Sharing and Specificity of Co-expression Networks across 35 Human Tissues

scientific article

Sharing and specificity of co-expression networks across 35 human tissues

Targeted brain proteomics uncover multiple pathways to Alzheimer's dementia

scholarly article by Lei Yu et al published July 2018 in Annals of Neurology

The Molecular and Neuropathological Consequences of Genetic Risk for Alzheimer's Dementia

scholarly article by Shinya Tasaki et al published 2018 in Frontiers in Neuroscience

The genetic landscape of a cell

scientific article

Transcriptome analysis reveals differential splicing events in IPF lung tissue

scientific article

Transcriptome analysis reveals differential splicing events in IPF lung tissue

scientific article published on 19 March 2014

Unsupervised detection of genes of influence in lung cancer using biological networks

scientific article

Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains

scientific article

metPropagate: network-guided propagation of metabolomic information for prioritization of metabolic disease genes

scientific article published on 02 July 2020

List of works by Sara Mostafavi

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

Allele-specific expression reveals interactions between genetic variation and environment

Allele-specific expression reveals interactions between genetic variation and environment

Association of Whole-Genome and NETRIN1 Signaling Pathway–Derived Polygenic Risk Scores for Major Depressive Disorder and White Matter Microstructure in the UK Biobank

Biologically relevant transfer learning improves transcription factor binding prediction

CD56bright natural killer regulatory cells in filgrastim primed donor blood or marrow products regulate chronic graft-versus-host disease: the Canadian Blood and Marrow Transplant Group randomized 0601 study results

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

Classical Human Leukocyte Antigen Alleles and C4 Haplotypes Are Not Significantly Associated With Depression

Combining many interaction networks to predict gene function and analyze gene lists ⬇️

Contributions of steroidogenic factor 1 to the transcription landscape of Y1 mouse adrenocortical tumor cells

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression

Differences in DNA methylation of white blood cell types at birth and in adulthood reflect postnatal immune maturation and influence accuracy of cell type prediction

EIF3G is associated with narcolepsy across ethnicities

Fast integration of heterogeneous data sources for predicting gene function with limited annotation

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

Genetic studies of major depressive disorder: why are there no genome-wide association study findings and what can we do about it?

Genetic variants in Alzheimer disease - molecular and brain network approaches

Genetic variation in the Major Histocompatibility Complex and association with depression

Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

Impact of the X Chromosome and sex on regulatory variation

Increased transcriptional activity of milk-related genes following the active phase of experimental autoimmune encephalomyelitis and multiple sclerosis

Inhalation of diesel exhaust and allergen alters human bronchial epithelium DNA methylation

Integration of genomics and metabolomics for prioritization of rare disease variants: a 2018 literature review. ⬇️

Labeling nodes using three degrees of propagation

Multi-omic Directed Networks Describe Features of Gene Regulation in Aged Brains and Expand the Set of Genes Driving Cognitive Decline

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation

Network pharmacology of JAK inhibitors

Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge

Parsing the Interferon Transcriptional Network and Its Disease Associations

Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes

Predicting node characteristics from molecular networks

Predictive modeling of therapy response in multiple sclerosis using gene expression data

Sharing and Specificity of Co-expression Networks across 35 Human Tissues

Sharing and specificity of co-expression networks across 35 human tissues

Targeted brain proteomics uncover multiple pathways to Alzheimer's dementia

The Molecular and Neuropathological Consequences of Genetic Risk for Alzheimer's Dementia

The genetic landscape of a cell

Transcriptome analysis reveals differential splicing events in IPF lung tissue

Transcriptome analysis reveals differential splicing events in IPF lung tissue

Unsupervised detection of genes of influence in lung cancer using biological networks

Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains

metPropagate: network-guided propagation of metabolomic information for prioritization of metabolic disease genes