Search filters

List of works by Todd J Treangen

Automated ensemble assembly and validation of microbial genomes

scientific article

Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923.

scientific article

Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station.

scientific article published on 10 August 2017

GAGE: A critical evaluation of genome assemblies and assembly algorithms

scientific article published on 6 January 2012

Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission

scientific article published on 02 July 2020

Leveraging Large Language Models for Predicting Microbial Virulence from Protein Structure and Sequence

scientific article published on 04 October 2023

Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters

scientific article published on 04 February 2022

Mash: fast genome and metagenome distance estimation using MinHash

scientific article

MetAMOS: a modular and open source metagenomic assembly and analysis pipeline

scientific article

PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment

scientific article published on 26 February 2021

RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission

scientific article published on 18 February 2021

SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning

scientific article published in 2022

Synthetic DNA and biosecurity: Nuances of predicting pathogenicity and the impetus for novel computational approaches for screening oligonucleotides

scientific article published on 06 August 2020

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

scientific article

Paulina is supported by:

About Paulina

Help