List of works - Scott C Chapman

A Direct Comparison of Remote Sensing Approaches for High-Throughput Phenotyping in Plant Breeding

scientific article

A Weakly Supervised Deep Learning Framework for Sorghum Head Detection and Counting

scientific article published on 27 June 2019

APSIM – Evolution towards a new generation of agricultural systems simulation

article

Adaptation science for agriculture and natural resource management—urgency and theoretical basis

article by Holger Meinke et al published October 2009 in Current Opinion in Environmental Sustainability

Adapting APSIM to model the physiology and genetics of complex adaptive traits in field crops

scientific article published on 16 April 2010

Aerial Imagery Analysis - Quantifying Appearance and Number of Sorghum Heads for Applications in Breeding and Agronomy

scientific article published on 23 October 2018

An overview of APSIM, a model designed for farming systems simulation

article

Assessment of the Potential Impacts of Wheat Plant Traits across Environments by Combining Crop Modeling and Global Sensitivity Analysis ⬇️

scientific article published on 22 January 2016

Breeder friendly phenotyping

scientific article published on 18 January 2020

Breeding for the future: what are the potential impacts of future frost and heat events on sowing and flowering time requirements for Australian bread wheat (Triticum aestivium) varieties?

scientific article

Characterization of drought stress environments for upland rice and maize in central Brazil

scientific article published on 10 October 2007

Combining Crop Growth Modeling and Statistical Genetic Modeling to Evaluate Phenotyping Strategies

scientific article published on 27 November 2019

Comparison of Modelling Strategies to Estimate Phenotypic Values from an Unmanned Aerial Vehicle with Spectral and Temporal Vegetation Indexes

scientific article published on 19 July 2021

Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV

scientific article published on 01 February 2016

Contribution of Crop Models to Adaptation in Wheat

scientific article

Crop and environmental attributes underpinning genotype by environment interaction in synthetic-derived bread wheat evaluated in Mexico and Australia

article

Crop design for specific adaptation in variable dryland production environments

scientific article published in 2014

Designing crops for adaptation to the drought and high‐temperature risks anticipated in future climates

scientific article published in March 2020

Detecting Sorghum Plant and Head Features from Multispectral UAV Imagery

scientific article published on 01 October 2021

Detection and use of QTL for complex traits in multiple environments.

scientific article published on April 2010

Development of a generic crop model template in the cropping system model APSIM

article

Developmental and growth controls of tillering and water-soluble carbohydrate accumulation in contrasting wheat (Triticum aestivum L.) genotypes: can we dissect them?

scientific article published on 3 December 2012

Did the Global Wheat Head Challenges solve wheat head counting ?

Differential gene expression of wheat progeny with contrasting levels of transpiration efficiency.

scientific article published on August 2006

Do wheat breeders have suitable genetic variation to overcome short coleoptiles and poor establishment in the warmer soils of future climates?

scientific article published on 01 October 2016

Domain Adaptation for Plant Organ Detection with Style Transfer

Dynamic quantification of canopy structure to characterize early plant vigour in wheat genotypes.

scientific article published on 15 June 2016

EasyPCC: Benchmark Datasets and Tools for High-Throughput Measurement of the Plant Canopy Coverage Ratio under Field Conditions.

scientific article

Estimating Photosynthetic Attributes from High-Throughput Canopy Hyperspectral Sensing in Sorghum

scientific article published on 08 April 2022

Evaluating Plant Breeding Strategies by Simulating Gene Action and Dryland Environment Effects

scientific article published in 2003

Evaluation of reduced-tillering (tin) wheat lines in managed, terminal water deficit environments ⬇️

scientific article published on July 19, 2013

Evaluation of the Phenotypic Repeatability of Canopy Temperature in Wheat Using Continuous-Terrestrial and Airborne Measurements

scientific article published on 09 July 2019

Evaluation of water status of wheat genotypes to aid prediction of yield on sodic soils using UAV-thermal imaging and machine learning

scientific article published in September 2021

Evolution and application of digital technologies to predict crop type and crop phenology in agriculture

scientific article published in January 2021

Expression profile analysis of the low-oxygen response in Arabidopsis root cultures

article

From QTLs to Adaptation Landscapes: Using Genotype-To-Phenotype Models to Characterize G×E Over Time

scientific article published on 04 December 2019

Frost Trends and their Estimated Impact on Yield in the Australian Wheatbelt

scientific article published in 2015

Frost trends and their estimated impact on yield in the Australian wheatbelt.

scientific article

Genetic variability in high temperature effects on seed-set in sorghum

scientific article published on 01 May 2013

Genotype by environment effects and selection for drought tolerance in tropical maize. II. Three-mode pattern analysis

scholarly article

Genotype by environment interaction and indirect selection for yield in sunflower

scientific article published in August 2001

Genotype by environment interaction and indirect selection for yield in sunflower

Genotype-specific P-spline response surfaces assist interpretation of regional wheat adaptation to climate change

scientific article published in July 2021

Genotypic variability in the response to elevated CO2 of wheat lines differing in adaptive traits

scientific article published on 01 March 2013

Global Wheat Head Detection (GWHD) Dataset: A Large and Diverse Dataset of High-Resolution RGB-Labelled Images to Develop and Benchmark Wheat Head Detection Methods

scientific article published on 20 August 2020

Global Wheat Head Detection 2021: An Improved Dataset for Benchmarking Wheat Head Detection Methods

scientific article published on 22 September 2021

Global adaptation patterns of Australian and CIMMYT spring bread wheat

scientific article published on September 2007

Heat and drought adaptive QTL in a wheat population designed to minimize confounding agronomic effects

scientific article published on 4 June 2010

Identification of Earliness Per Se Flowering Time Locus in Spring Wheat through a Genome-Wide Association Study

article

Identification of differentially expressed genes in wheat undergoing gradual water deficit stress using a subtractive hybridisation approach

scientific article published in March 2005

Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling

scientific article

Improvement of Predictive Ability by Uniform Coverage of the Target Genetic Space.

scientific article

Improving Biomass and Grain Yield Prediction of Wheat Genotypes on Sodic Soil Using Integrated High-Resolution Multispectral, Hyperspectral, 3D Point Cloud, and Machine Learning Techniques

scientific article published on 2 September 2021

Improving estimation of in-season crop water use and health of wheat genotypes on sodic soils using spatial interpolation techniques and multi-component metrics

scientific article published in September 2021

Improving process-based crop models to better capture genotype×environment×management interactions

scientific article published on 01 April 2019

Indirect selection using reference and probe genotype performance in multi-environment trials

article published in 2011

Integrating a crop growth model and radiative transfer model to improve estimation of crop traits based on deep learning

scientific article published in 2022

Integrating crop growth models with remote sensing for predicting biomass yield of sorghum

scientific article published in January 2021

Integration of APSIM and PROSAIL models to develop more precise radiometric estimation of crop traits using deep learning

scientific article published on 3 February 2021

Large-scale characterization of drought pattern: a continent-wide modelling approach applied to the Australian wheatbelt--spatial and temporal trends.

scientific article

Limiting transpiration rate in high evaporative demand conditions to improve Australian wheat productivity

scientific article published in January 2021

Meeting Report on the Challenge of Inference from Genome to Phenome

scientific article published in October 2015

Modelling impact of early vigour on wheat yield in dryland regions

scientific article published in 2019

Modelling of Genotype by Environment Interaction and Prediction of Complex Traits across Multiple Environments as a Synthesis of Crop Growth Modelling, Genetics and Statistics

article

Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding

scientific article published on 30 June 2018

Models for navigating biological complexity in breeding improved crop plants

scientific article published on 7 November 2006

Molecular detection of genomic regions associated with grain yield and yield-related components in an elite bread wheat cross evaluated under irrigated and rainfed conditions

scientific article published on 29 October 2009

Multi-Spectral Imaging from an Unmanned Aerial Vehicle Enables the Assessment of Seasonal Leaf Area Dynamics of Sorghum Breeding Lines.

scientific article published on 8 September 2017

Multi-environment QTL mixed models for drought stress adaptation in wheat.

scientific article published on 12 August 2008

On systems thinking, systems biology, and the in silico plant

scientific article published on March 2004

On the dynamic determinants of reproductive failure under drought in maize

scientific article published in January 2019

Pheno-Copter: A Low-Altitude, Autonomous Remote-Sensing Robotic Helicopter for High-Throughput Field-Based Phenotyping

scientific article published on 17 June 2014

Phenological optimization of late reproductive phase for raising wheat yield potential in irrigated mega-environments

scientific article published on 6 April 2022

Plant adaptation to climate change?opportunities and priorities in breeding

article

Predictions of heading date in bread wheat (Triticum aestivum L.) using QTL-based parameters of an ecophysiological model

scientific article published on 22 August 2014

Projected impact of future climate on water-stress patterns across the Australian wheatbelt

scientific article published on 25 November 2017

Quantification of the effects of VRN1 and Ppd-D1 to predict spring wheat (Triticum aestivum) heading time across diverse environments

scientific article published on 19 July 2013

Raising yield potential of wheat. I. Overview of a consortium approach and breeding strategies.

scientific article published on 15 October 2010

Recent changes in southern Australian frost occurrence: implications for wheat production risk

article

SensorDB: a virtual laboratory for the integration, visualization and analysis of varied biological sensor data

scientific article

Short-term responses of leaf growth rate to water deficit scale up to whole-plant and crop levels: an integrated modelling approach in maize

scientific article published on 10 December 2007

Simulated breeding with QU-GENE graphical user interface

scientific article published on 01 January 2014

Simulating the yield impacts of organ-level quantitative trait loci associated with drought response in maize: a "gene-to-phenotype" modeling approach

scientific article published on 28 September 2009

Simultaneous selection of major and minor genes: use of QTL to increase selection efficiency of coleoptile length of wheat (Triticum aestivum L.).

scientific article published on 10 April 2009

Sorghum Biomass Prediction Using Uav-Based Remote Sensing Data and Crop Model Simulation

scientific article published in July 2018

Spatial and seasonal effects confounding interpretation of sunflower yields in Argentina

scientific article published in January 2002

The Quest for Understanding Phenotypic Variation via Integrated Approaches in the Field Environment

scientific article published in August 2016

The Value of Tactical Adaptation to El Niño–Southern Oscillation for East Australian Wheat

scientific article published on 11 September 2018

The case for evidence‐based policy to support stress‐resilient cropping systems

scientific article published in February 2017

The shifting influence of drought and heat stress for crops in northeast Australia.

scientific article

Trait physiology and crop modelling as a framework to link phenotypic complexity to underlying genetic systems

scientific article published in 2005

UAV-Thermal Imaging: A Robust Technology to Evaluate in-field Crop Water Stress and Yield Variation of Wheat Genotypes

scientific article published in December 2020

UAV-Thermal imaging and agglomerative hierarchical clustering techniques to evaluate and rank physiological performance of wheat genotypes on sodic soil

scientific article published in March 2021

UAV-thermal imaging: A technological breakthrough for monitoring and quantifying crop abiotic stress to help sustain productivity on sodic soils – A case review on wheat

scientific article published in August 2021

Unsupervised Plot-Scale LAI Phenotyping via UAV-Based Imaging, Modelling, and Machine Learning

scientific article published on 04 July 2022

Using a gene-based phenology model to identify optimal flowering periods of spring wheat in irrigated mega-environments

scientific article published on 10 July 2021

Using biplots to interpret gene expression patterns in plants

scientific article published on 01 January 2002

Utilisation of unmanned aerial vehicle imagery to assess growth parameters in mungbean (Vigna radiata (L.) Wilczek)

scientific article published on 11 September 2023

Variation for and relationships among biomass and grain yield component traits conferring improved yield and grain weight in an elite wheat population grown in variable yield environments

scientific article published in 2009

VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation

scientific article published in 2023

Velocity of temperature and flowering time in wheat - assisting breeders to keep pace with climate change.

scientific article published on 3 October 2015

List of works by Scott C Chapman

A Direct Comparison of Remote Sensing Approaches for High-Throughput Phenotyping in Plant Breeding

A Weakly Supervised Deep Learning Framework for Sorghum Head Detection and Counting

APSIM – Evolution towards a new generation of agricultural systems simulation

Adaptation science for agriculture and natural resource management—urgency and theoretical basis

Adapting APSIM to model the physiology and genetics of complex adaptive traits in field crops

Aerial Imagery Analysis - Quantifying Appearance and Number of Sorghum Heads for Applications in Breeding and Agronomy

An overview of APSIM, a model designed for farming systems simulation

Assessment of the Potential Impacts of Wheat Plant Traits across Environments by Combining Crop Modeling and Global Sensitivity Analysis ⬇️

Breeder friendly phenotyping

Breeding for the future: what are the potential impacts of future frost and heat events on sowing and flowering time requirements for Australian bread wheat (Triticum aestivium) varieties?

Characterization of drought stress environments for upland rice and maize in central Brazil

Combining Crop Growth Modeling and Statistical Genetic Modeling to Evaluate Phenotyping Strategies

Comparison of Modelling Strategies to Estimate Phenotypic Values from an Unmanned Aerial Vehicle with Spectral and Temporal Vegetation Indexes

Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV

Contribution of Crop Models to Adaptation in Wheat

Crop and environmental attributes underpinning genotype by environment interaction in synthetic-derived bread wheat evaluated in Mexico and Australia

Crop design for specific adaptation in variable dryland production environments

Designing crops for adaptation to the drought and high‐temperature risks anticipated in future climates

Detecting Sorghum Plant and Head Features from Multispectral UAV Imagery

Detection and use of QTL for complex traits in multiple environments.

Development of a generic crop model template in the cropping system model APSIM

Developmental and growth controls of tillering and water-soluble carbohydrate accumulation in contrasting wheat (Triticum aestivum L.) genotypes: can we dissect them?

Did the Global Wheat Head Challenges solve wheat head counting ?

Differential gene expression of wheat progeny with contrasting levels of transpiration efficiency.

Do wheat breeders have suitable genetic variation to overcome short coleoptiles and poor establishment in the warmer soils of future climates?

Domain Adaptation for Plant Organ Detection with Style Transfer

Dynamic quantification of canopy structure to characterize early plant vigour in wheat genotypes.

EasyPCC: Benchmark Datasets and Tools for High-Throughput Measurement of the Plant Canopy Coverage Ratio under Field Conditions.

Estimating Photosynthetic Attributes from High-Throughput Canopy Hyperspectral Sensing in Sorghum

Evaluating Plant Breeding Strategies by Simulating Gene Action and Dryland Environment Effects

Evaluation of reduced-tillering (tin) wheat lines in managed, terminal water deficit environments ⬇️

Evaluation of the Phenotypic Repeatability of Canopy Temperature in Wheat Using Continuous-Terrestrial and Airborne Measurements

Evaluation of water status of wheat genotypes to aid prediction of yield on sodic soils using UAV-thermal imaging and machine learning

Evolution and application of digital technologies to predict crop type and crop phenology in agriculture

Expression profile analysis of the low-oxygen response in Arabidopsis root cultures

From QTLs to Adaptation Landscapes: Using Genotype-To-Phenotype Models to Characterize G×E Over Time

Frost Trends and their Estimated Impact on Yield in the Australian Wheatbelt

Frost trends and their estimated impact on yield in the Australian wheatbelt.

Genetic variability in high temperature effects on seed-set in sorghum

Genotype by environment effects and selection for drought tolerance in tropical maize. II. Three-mode pattern analysis

Genotype by environment interaction and indirect selection for yield in sunflower

Genotype by environment interaction and indirect selection for yield in sunflower

Genotype-specific P-spline response surfaces assist interpretation of regional wheat adaptation to climate change

Genotypic variability in the response to elevated CO2 of wheat lines differing in adaptive traits

Global Wheat Head Detection (GWHD) Dataset: A Large and Diverse Dataset of High-Resolution RGB-Labelled Images to Develop and Benchmark Wheat Head Detection Methods

Global Wheat Head Detection 2021: An Improved Dataset for Benchmarking Wheat Head Detection Methods

Global adaptation patterns of Australian and CIMMYT spring bread wheat

Heat and drought adaptive QTL in a wheat population designed to minimize confounding agronomic effects

Identification of Earliness Per Se Flowering Time Locus in Spring Wheat through a Genome-Wide Association Study

Identification of differentially expressed genes in wheat undergoing gradual water deficit stress using a subtractive hybridisation approach

Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling

Improvement of Predictive Ability by Uniform Coverage of the Target Genetic Space.

Improving Biomass and Grain Yield Prediction of Wheat Genotypes on Sodic Soil Using Integrated High-Resolution Multispectral, Hyperspectral, 3D Point Cloud, and Machine Learning Techniques

Improving estimation of in-season crop water use and health of wheat genotypes on sodic soils using spatial interpolation techniques and multi-component metrics

Improving process-based crop models to better capture genotype×environment×management interactions

Indirect selection using reference and probe genotype performance in multi-environment trials

Integrating a crop growth model and radiative transfer model to improve estimation of crop traits based on deep learning

Integrating crop growth models with remote sensing for predicting biomass yield of sorghum

Integration of APSIM and PROSAIL models to develop more precise radiometric estimation of crop traits using deep learning

Large-scale characterization of drought pattern: a continent-wide modelling approach applied to the Australian wheatbelt--spatial and temporal trends.

Limiting transpiration rate in high evaporative demand conditions to improve Australian wheat productivity

Meeting Report on the Challenge of Inference from Genome to Phenome

Modelling impact of early vigour on wheat yield in dryland regions

Modelling of Genotype by Environment Interaction and Prediction of Complex Traits across Multiple Environments as a Synthesis of Crop Growth Modelling, Genetics and Statistics

Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding

Models for navigating biological complexity in breeding improved crop plants

Molecular detection of genomic regions associated with grain yield and yield-related components in an elite bread wheat cross evaluated under irrigated and rainfed conditions

Multi-Spectral Imaging from an Unmanned Aerial Vehicle Enables the Assessment of Seasonal Leaf Area Dynamics of Sorghum Breeding Lines.

Multi-environment QTL mixed models for drought stress adaptation in wheat.

On systems thinking, systems biology, and the in silico plant

On the dynamic determinants of reproductive failure under drought in maize

Pheno-Copter: A Low-Altitude, Autonomous Remote-Sensing Robotic Helicopter for High-Throughput Field-Based Phenotyping

Phenological optimization of late reproductive phase for raising wheat yield potential in irrigated mega-environments

Plant adaptation to climate change?opportunities and priorities in breeding

Predictions of heading date in bread wheat (Triticum aestivum L.) using QTL-based parameters of an ecophysiological model

Projected impact of future climate on water-stress patterns across the Australian wheatbelt

Quantification of the effects of VRN1 and Ppd-D1 to predict spring wheat (Triticum aestivum) heading time across diverse environments

Raising yield potential of wheat. I. Overview of a consortium approach and breeding strategies.

Recent changes in southern Australian frost occurrence: implications for wheat production risk