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List of works by G. P. S. Raghava

A Platform for Designing Genome-Based Personalized Immunotherapy or Vaccine against Cancer

scientific article

A Web Server and Mobile App for Computing Hemolytic Potency of Peptides

scientific article

A Web-Based Platform for Designing Vaccines against Existing and Emerging Strains of Mycobacterium tuberculosis

scientific article

A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes.

scientific article published in January 2007

A neural network method for prediction of beta-turn types in proteins using evolutionary information.

scientific article

A neural-network based method for prediction of gamma-turns in proteins from multiple sequence alignment.

scientific article

A random forest model for predicting exosomal proteins using evolutionary information and motifs

scientific article published in 2023

A simple approach for predicting protein-protein interactions.

scientific article published in November 2010

A web server for analysis, comparison and prediction of protein ligand binding sites

scientific article

A web server for predicting inhibitors against bacterial target GlmU protein ⬇️

scientific article published on July 6, 2011

A web-based resource for designing therapeutics against Ebola Virus

scientific article published on 26 April 2016

AlgPred: prediction of allergenic proteins and mapping of IgE epitopes.

scientific article published on July 2006

An in silico platform for predicting, screening and designing of antihypertensive peptides.

scientific article published on 27 July 2015

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

scientific article published in March 2004

Analysis and prediction of antibacterial peptides.

scientific article

Analysis and prediction of cancerlectins using evolutionary and domain information.

scientific article

AntiBP2: improved version of antibacterial peptide prediction

scientific article

AntiTbPdb: a knowledgebase of anti-tubercular peptides.

scientific article published in January 2018

Anticancer properties of a defensin like class IId bacteriocin Laterosporulin10.

scientific article

AntigenDB: an immunoinformatics database of pathogen antigens

scientific article

ApoCanD: Database of human apoptotic proteins in the context of cancer.

scientific article

BLAST-based structural annotation of protein residues using Protein Data Bank.

scientific article

Benchmarking of different molecular docking methods for protein-peptide docking

scientific article published on 04 February 2019

BhairPred: prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques.

scientific article

Branching of the p-nitrophenol (PNP) degradation pathway in burkholderia sp. Strain SJ98: Evidences from genetic characterization of PNP gene cluster ⬇️

scientific article published on June 8, 2012

Bridging innate and adaptive antitumor immunity targeting glycans.

scientific article

CCDB: a curated database of genes involved in cervix cancer

scientific article

CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides.

scientific article

CPPsite: a curated database of cell penetrating peptides ⬇️

scientific article published on March 7, 2012

CancerDR: cancer drug resistance database.

scientific article published on January 2013

CancerPDF: A repository of cancer-associated peptidome found in human biofluids.

scientific article published on 4 May 2017

Cell-penetrating peptide and antibiotic combination therapy: a potential alternative to combat drug resistance in methicillin-resistant Staphylococcus aureus.

scientific article published on 2 February 2016

Classification of early and late stage liver hepatocellular carcinoma patients from their genomics and epigenomics profiles

scientific article published on 06 September 2019

Classification of nuclear receptors based on amino acid composition and dipeptide composition.

scientific article published on 23 March 2004

Computational Prediction of the Immunomodulatory Potential of RNA Sequences.

scientific article published in January 2017

Computational approach for designing tumor homing peptides.

scientific article published on January 2013

Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

scientific article published on 21 February 2008

Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential.

scientific article published on 17 February 2017

Computer-aided prediction and design of IL-6 inducing peptides: IL-6 plays a crucial role in COVID-19

scientific article published on 09 October 2020

Computer-aided prediction of antigen presenting cell modulators for designing peptide-based vaccine adjuvants.

scientific article published on 3 July 2018

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein

scientific article

CyclinPred: a SVM-based method for predicting cyclin protein sequences.

scientific article

CytoPred: a server for prediction and classification of cytokines

scientific article published on 20 February 2008

DPROT: prediction of disordered proteins using evolutionary information

scientific article published on 19 April 2008

Designing B-Cell Epitopes for Immunotherapy and Subunit Vaccines

scientific article published on 01 January 2015

Designing of highly effective complementary and mismatch siRNAs for silencing a gene

scientific article

Designing of inhibitors against drug tolerant Mycobacterium tuberculosis (H37Rv).

scientific article published on 8 March 2013

Designing of interferon-gamma inducing MHC class-II binders.

scientific article

Designing of peptides with desired half-life in intestine-like environment

scientific article

Designing of promiscuous inhibitors against pancreatic cancer cell lines

scientific article published on 14 April 2014

Development of a model webserver for breed identification using microsatellite DNA marker

scientific article

Draft Genome Sequence of Amycolatopsis decaplanina Strain DSM 44594T.

scientific article

Draft Genome Sequence of Rhodococcus qingshengii Strain BKS 20-40.

scientific article published on 28 March 2013

Draft Genome Sequence of Rhodococcus triatomae Strain BKS 15-14.

scientific article

Draft Genome Sequence of Salt-Tolerant Yeast Debaryomyces hansenii var. hansenii MTCC 234

scientific article

Draft Genome Sequence of the 2-Chloro-4-Nitrophenol-Degrading Bacterium Arthrobacter sp. Strain SJCon ⬇️

scientific article published on March 7, 2013

Draft Genome Sequence of the Nitrophenol-Degrading Actinomycete Rhodococcus imtechensis RKJ300 ⬇️

scientific article published on July 1, 2012

DrugMint: a webserver for predicting and designing of drug-like molecules

scientific article

ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins.

scientific article

ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST.

scientific article published on July 2004

Expression based biomarkers and models to classify early and late-stage samples of Papillary Thyroid Carcinoma

scientific article published on 23 April 2020

FermFooDb: A database of bioactive peptides derived from fermented foods

scientific article published on 08 April 2021

GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors.

scientific article published on July 2004

GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors

scientific article

Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer.

scientific article published on 28 March 2017

Genes involved in degradation of para-nitrophenol are differentially arranged in form of non-contiguous gene clusters in Burkholderia sp. strain SJ98

scientific article

Genome Sequence of the Halotolerant Bacterium Imtechella halotolerans K1 T ⬇️

scientific article published on July 1, 2012

Genome Sequence of the Marine Bacterium Marinilabilia salmonicolor JCM 21150 T ⬇️

scientific article published on July 1, 2012

Genome Sequence of the “Indian Bison Type” Biotype of Mycobacterium avium subsp. paratuberculosis Strain S5 ⬇️

scientific article published on February 28, 2013

Genome annotation of Burkholderia sp. SJ98 with special focus on chemotaxis genes

scientific article

Genome sequence of the nitroaromatic compound-degrading Bacterium Burkholderia sp. strain SJ98.

scientific article published on June 2012

Genome sequence of the oleaginous red yeast Rhodosporidium toruloides MTCC 457.

scientific article published on August 2012

GlycoPP: A Webserver for Prediction of N- and O-Glycosites in Prokaryotic Protein Sequences ⬇️

scientific article published on July 9, 2012

HaptenDB: a comprehensive database of haptens, carrier proteins and anti-hapten antibodies

scientific article

Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides.

scientific article published on 29 October 2013

Herceptin resistance database for understanding mechanism of resistance in breast cancer patients.

scientific article published on 27 March 2014

Hmrbase: a database of hormones and their receptors

scientific article published on 9 July 2009

Identification and characterization of novel protein-derived arginine-rich cell-penetrating peptides

scientific article

Identification of B-cell epitopes in an antigen for inducing specific class of antibodies.

scientific article published on 30 October 2013

Identification of DNA-binding proteins using support vector machines and evolutionary profiles

scientific article

Identification of NAD interacting residues in proteins

scientific article

Identification of conformational B-cell Epitopes in an antigen from its primary sequence ⬇️

scientific article published on October 20, 2010

Identification of mannose interacting residues using local composition

scientific article published on 13 September 2011

Identification of prognostic biomarkers for major subtypes of non-small-cell lung cancer using genomic and clinical data

scientific article published on 14 July 2020

Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides

scientific article published on 30 January 2015

In Silico Approach for Prediction of Antifungal Peptides.

scientific article published on 26 February 2018

In Silico Tools and Databases for Designing Peptide-Based Vaccine and Drugs.

scientific article published on 5 March 2018

In silico analysis to identify vaccine candidates common to multiple serotypes of Shigella and evaluation of their immunogenicity.

scientific article

In silico approach for predicting toxicity of peptides and proteins

scientific article

In silico approaches for designing highly effective cell penetrating peptides.

scientific article

In silico approaches for predicting the half-life of natural and modified peptides in blood.

scientific article published in June 2018

In silico models for designing and discovering novel anticancer peptides

scientific article published on 18 October 2013

In silico platform for predicting and initiating β-turns in a protein at desired locations.

scientific article published on 25 March 2015

In silico platform for prediction of N-, O- and C-glycosites in eukaryotic protein sequences

scientific article

MHCBN: a comprehensive database of MHC binding and non-binding peptides

scientific article (publication date: 22 March 2003)

Managing Drug Resistance in Cancer: Role of Cancer Informatics.

scientific article published on January 2016

Molecular Property Diagnostic Suite for COVID-19 (MPDSCOVID-19): an open-source disease-specific drug discovery portal

scientific article published in 2024

NAGbinder: An approach for identifying N-acetylglucosamine interacting residues of a protein from its primary sequence

scientific article published on 07 November 2019

NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database

scientific article

NeuroPIpred: a tool to predict, design and scan insect neuropeptides ⬇️

scientific article published on 26 March 2019

Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics

scientific article published on 25 March 2016

Open source drug discovery--a new paradigm of collaborative research in tuberculosis drug development.

scientific article published on 22 July 2011

OxDBase: a database of oxygenases involved in biodegradation.

scientific article

Oxypred: prediction and classification of oxygen-binding proteins.

scientific article published on December 2007

PCMdb: pancreatic cancer methylation database.

scientific article published on 26 February 2014

PEPlife: A Repository of the Half-life of Peptides

scientific article (publication date: 7 November 2016)

PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues

scientific article published on 21 December 2015

PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors

scientific article

PRRDB: a comprehensive database of pattern-recognition receptors and their ligands

scientific article

PSLpred: prediction of subcellular localization of bacterial proteins

scientific article published on 04 February 2005

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures

scientific article published on 12 June 2014

Peptide Toxicity Prediction

article

PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies ⬇️

scientific article published on April 11, 2012

Predicting sub-cellular localization of tRNA synthetases from their primary structures.

scientific article

Prediction and classification of chemokines and their receptors.

scientific article published on 2 June 2009

Prediction and classification of ncRNAs using structural information

scientific article

Prediction of Cell-Penetrating Potential of Modified Peptides Containing Natural and Chemically Modified Residues.

scientific article published on 12 April 2018

Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information

scientific article

Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants.

scientific article

Prediction of RNA binding sites in a protein using SVM and PSSM profile.

scientific article published in April 2008

Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule

scientific article

Prediction of guide strand of microRNAs from its sequence and secondary structure

scientific article (publication date: 9 April 2009)

Prediction of mitochondrial proteins of malaria parasite using split amino acid composition and PSSM profile.

scientific article

Prediction of mitochondrial proteins using support vector machine and hidden Markov model.

scientific article published on 8 December 2005

Prediction of risk scores for colorectal cancer patients from the concentration of proteins involved in mitochondrial apoptotic pathway

scientific article published on 09 September 2019

Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.

scientific article

Prediction of uridine modifications in tRNA sequences

scientific article

Prioritization of anticancer drugs against a cancer using genomic features of cancer cells: A step towards personalized medicine

scientific article published on 31 March 2016

ProCarDB: a database of bacterial carotenoids

scientific article published on 26 May 2016

ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins

scientific article

ProPred1: prediction of promiscuous MHC Class-I binding sites.

scientific article published in May 2003

QSAR-based models for designing quinazoline/imidazothiazoles/pyrazolopyrimidines based inhibitors against wild and mutant EGFR

scientific article (publication date: 2014)

Quantification of the variation in percentage identity for protein sequence alignments.

scientific article

Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure.

scientific article published in November 2005

Role of evolutionary information in prediction of aromatic-backbone NH interactions in proteins.

scientific article

SATPdb: a database of structurally annotated therapeutic peptides

scientific article published on 2 November 2015

SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.

scientific article published on 22 January 2004

SVM based prediction of RNA-binding proteins using binding residues and evolutionary information.

scientific article

Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation.

scientific article published on 19 February 2004

Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search

scientific article

THPdb: Database of FDA-approved peptide and protein therapeutics

scientific article published on 31 July 2017

Topical Delivery of Protein and Peptide Using Novel Cell Penetrating Peptide IMT-P8.

scientific article published on 18 May 2016

TopicalPdb: A database of topically delivered peptides

scientific article published on 12 February 2018

Tumor homing peptides as molecular probes for cancer therapeutics, diagnostics and theranostics.

scientific article

TumorHoPe: a database of tumor homing peptides

scientific article

VGIchan: prediction and classification of voltage-gated ion channels.

scientific article published on November 2006

VICMpred: an SVM-based method for the prediction of functional proteins of Gram-negative bacteria using amino acid patterns and composition.

scientific article published on February 2006

VaccineDA: Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants

scientific article published on 27 July 2015

ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis

scientific article (publication date: 16 September 2016)

ccPDB: compilation and creation of data sets from Protein Data Bank ⬇️

scientific article published on December 1, 2011

dbEM: A database of epigenetic modifiers curated from cancerous and normal genomes.

scientific article published on 18 January 2016

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